miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 5' -54.8 NC_006151.1 + 2206 0.66 0.913781
Target:  5'- gGGCCGGUgggUCUccacgGCGCCcccggcggcGGCGcGGACGc -3'
miRNA:   3'- gUCGGCCA---AGA-----UGCGG---------UUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 2822 0.67 0.888044
Target:  5'- gCGGCCGGgUCcAgGCgGACGcGGACGu -3'
miRNA:   3'- -GUCGGCCaAGaUgCGgUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 3910 0.66 0.925199
Target:  5'- aGGCCGGg-CUGCucggGCCAgaGCGgGGGCAg -3'
miRNA:   3'- gUCGGCCaaGAUG----CGGU--UGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 4218 0.68 0.84262
Target:  5'- gCGGCCGGg---GCGCgGGCGggcgcGGGCAg -3'
miRNA:   3'- -GUCGGCCaagaUGCGgUUGCa----CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 4325 0.67 0.894834
Target:  5'- gCGGCCGGg-CUGCGCggcggcgaaggCGGCGcGGACGc -3'
miRNA:   3'- -GUCGGCCaaGAUGCG-----------GUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 18306 0.66 0.940491
Target:  5'- aAGCCGGagCgggGCGCCuccuCG-GGGCGc -3'
miRNA:   3'- gUCGGCCaaGa--UGCGGuu--GCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 19011 0.66 0.919612
Target:  5'- cCAGCCGcGcgC-GCGCCGGCGaGGugAa -3'
miRNA:   3'- -GUCGGC-CaaGaUGCGGUUGCaCCugU- -5'
29459 5' -54.8 NC_006151.1 + 20129 0.68 0.834324
Target:  5'- gGGCUGGggggCggGCGCCGcgggggcggcGCGUGGACc -3'
miRNA:   3'- gUCGGCCaa--Ga-UGCGGU----------UGCACCUGu -5'
29459 5' -54.8 NC_006151.1 + 20187 0.66 0.919612
Target:  5'- gCGGCCGGUagaugcgauUCcGCGCgCAGCGccGGGCc -3'
miRNA:   3'- -GUCGGCCA---------AGaUGCG-GUUGCa-CCUGu -5'
29459 5' -54.8 NC_006151.1 + 21494 0.68 0.858616
Target:  5'- gCGGCCGGggg-GCGCgGGCGUcaccgGGGCGg -3'
miRNA:   3'- -GUCGGCCaagaUGCGgUUGCA-----CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 25275 0.71 0.712459
Target:  5'- gAGuuGGUgugugugCUugGCCGcggggACGUGGGCGa -3'
miRNA:   3'- gUCggCCAa------GAugCGGU-----UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 30234 0.71 0.712459
Target:  5'- gGGcCCGGggUUGCGCCGGCG-GGAgAg -3'
miRNA:   3'- gUC-GGCCaaGAUGCGGUUGCaCCUgU- -5'
29459 5' -54.8 NC_006151.1 + 37391 0.67 0.901389
Target:  5'- aCGGCCGcGUccgCUACGgCGGCGccggGGACu -3'
miRNA:   3'- -GUCGGC-CAa--GAUGCgGUUGCa---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 37834 0.7 0.732501
Target:  5'- -cGCCGGgcCUACGCCGACaUGGcCu -3'
miRNA:   3'- guCGGCCaaGAUGCGGUUGcACCuGu -5'
29459 5' -54.8 NC_006151.1 + 38194 0.7 0.761871
Target:  5'- -cGCUGGU---GCGCUAcaGCGUGGACGg -3'
miRNA:   3'- guCGGCCAagaUGCGGU--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 50361 0.67 0.894834
Target:  5'- -cGCCGcgUCUcCGCCGGCGgGGGCGa -3'
miRNA:   3'- guCGGCcaAGAuGCGGUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 50493 0.66 0.935638
Target:  5'- gAGCCGGaccccgUCUACGCCAcCGUcGucCAg -3'
miRNA:   3'- gUCGGCCa-----AGAUGCGGUuGCA-CcuGU- -5'
29459 5' -54.8 NC_006151.1 + 55174 0.67 0.894834
Target:  5'- gAGaCCGGggC-GCGCauccuggaCAGCGUGGACAc -3'
miRNA:   3'- gUC-GGCCaaGaUGCG--------GUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 55245 0.66 0.918466
Target:  5'- gCAGCCGGUgcaggACGCCuuccgcaccucCGUGGuCAa -3'
miRNA:   3'- -GUCGGCCAaga--UGCGGuu---------GCACCuGU- -5'
29459 5' -54.8 NC_006151.1 + 56970 0.67 0.894834
Target:  5'- -cGCgCGGUUgUACauGCCGACGaGGGCGg -3'
miRNA:   3'- guCG-GCCAAgAUG--CGGUUGCaCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.