miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 3' -54.6 NC_006151.1 + 62157 1.1 0.002671
Target:  5'- cUUCCACAUCAGCCUCUGGAAGACGGCg -3'
miRNA:   3'- -AAGGUGUAGUCGGAGACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 23501 0.77 0.382606
Target:  5'- gUCCAgGUUGGCCUCcaccgacaGGGAGACGGUg -3'
miRNA:   3'- aAGGUgUAGUCGGAGa-------CCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 71618 0.74 0.492994
Target:  5'- -aCCACcgCGGCCUUcucgccggGGggGACGGUc -3'
miRNA:   3'- aaGGUGuaGUCGGAGa-------CCuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 78747 0.73 0.563709
Target:  5'- -cCCACGUCcGCCgUCUGcGccGAGGCGGCg -3'
miRNA:   3'- aaGGUGUAGuCGG-AGAC-C--UUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 25359 0.73 0.59489
Target:  5'- -aUCACAUCGGa---UGGGAGGCGGCg -3'
miRNA:   3'- aaGGUGUAGUCggagACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 98692 0.73 0.59489
Target:  5'- -cCCGCGUCGuGCCcCcGGAgcAGACGGCg -3'
miRNA:   3'- aaGGUGUAGU-CGGaGaCCU--UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35978 0.72 0.615833
Target:  5'- -gCCGCcgCGGCCga-GGAAGAgGGCa -3'
miRNA:   3'- aaGGUGuaGUCGGagaCCUUCUgCCG- -5'
29460 3' -54.6 NC_006151.1 + 21362 0.71 0.709711
Target:  5'- cUCCGCGggcugCGGCCacccgCUGGGcacGACGGCc -3'
miRNA:   3'- aAGGUGUa----GUCGGa----GACCUu--CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 55130 0.71 0.709711
Target:  5'- -gCCACAUCGGCgacaUCacGGAGACGGUg -3'
miRNA:   3'- aaGGUGUAGUCGg---AGacCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 127998 0.71 0.709711
Target:  5'- cUCCGCGUCgcGGUCgcgGGgcGGCGGCg -3'
miRNA:   3'- aAGGUGUAG--UCGGagaCCuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 53714 0.7 0.719923
Target:  5'- -cCCGCGgaAGCCgaacucCUGGAAGAUGGUg -3'
miRNA:   3'- aaGGUGUagUCGGa-----GACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 18146 0.7 0.719923
Target:  5'- gUCCAUGUCGGCgg--GGgcGGCGGCg -3'
miRNA:   3'- aAGGUGUAGUCGgagaCCuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 14201 0.7 0.72094
Target:  5'- gUCgGCAUCGGCCUCgacgacgacgaucgcGGGAcccGACGGUa -3'
miRNA:   3'- aAGgUGUAGUCGGAGa--------------CCUU---CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 114931 0.7 0.730055
Target:  5'- -gUCGCGcUCGGCCUCcGG-GGugGGCg -3'
miRNA:   3'- aaGGUGU-AGUCGGAGaCCuUCugCCG- -5'
29460 3' -54.6 NC_006151.1 + 103974 0.7 0.730055
Target:  5'- --gCGCGUCGGCgagCUGGA-GGCGGCc -3'
miRNA:   3'- aagGUGUAGUCGga-GACCUuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 131097 0.69 0.769595
Target:  5'- gUCCACGUCggcggggggcccGGCCgcggCgcgGGAGGccGCGGCg -3'
miRNA:   3'- aAGGUGUAG------------UCGGa---Ga--CCUUC--UGCCG- -5'
29460 3' -54.6 NC_006151.1 + 39789 0.69 0.779182
Target:  5'- -aCCGCG-CGGCCaaccgCUGGggGcuCGGCg -3'
miRNA:   3'- aaGGUGUaGUCGGa----GACCuuCu-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 64530 0.69 0.779182
Target:  5'- -gCCGCcgCGGCCgCgucGggGGCGGCg -3'
miRNA:   3'- aaGGUGuaGUCGGaGac-CuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 133086 0.69 0.807073
Target:  5'- -aCCACcgCGGCCUgCaGGAAG-CGGUc -3'
miRNA:   3'- aaGGUGuaGUCGGA-GaCCUUCuGCCG- -5'
29460 3' -54.6 NC_006151.1 + 106176 0.69 0.815159
Target:  5'- -aCCGCGUCGcgcacccGCCgCUGGAGccGGCGGUg -3'
miRNA:   3'- aaGGUGUAGU-------CGGaGACCUU--CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.