miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 3' -54.6 NC_006151.1 + 3999 0.68 0.833464
Target:  5'- -gCCACGUUGGCCgggGcGAAGAgGGCc -3'
miRNA:   3'- aaGGUGUAGUCGGagaC-CUUCUgCCG- -5'
29460 3' -54.6 NC_006151.1 + 6137 0.68 0.841887
Target:  5'- cUCCgGCcgCGGCCgc--GAGGACGGCg -3'
miRNA:   3'- aAGG-UGuaGUCGGagacCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 8719 0.66 0.93096
Target:  5'- cUCCGcCGUC-GCCUCgguccgaGGAGGGgGGUg -3'
miRNA:   3'- aAGGU-GUAGuCGGAGa------CCUUCUgCCG- -5'
29460 3' -54.6 NC_006151.1 + 14201 0.7 0.72094
Target:  5'- gUCgGCAUCGGCCUCgacgacgacgaucgcGGGAcccGACGGUa -3'
miRNA:   3'- aAGgUGUAGUCGGAGa--------------CCUU---CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 18146 0.7 0.719923
Target:  5'- gUCCAUGUCGGCgg--GGgcGGCGGCg -3'
miRNA:   3'- aAGGUGUAGUCGgagaCCuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 21362 0.71 0.709711
Target:  5'- cUCCGCGggcugCGGCCacccgCUGGGcacGACGGCc -3'
miRNA:   3'- aAGGUGUa----GUCGGa----GACCUu--CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 21418 0.67 0.8735
Target:  5'- -gCgGCGUCucgGGCCUC-GGggGucGCGGCg -3'
miRNA:   3'- aaGgUGUAG---UCGGAGaCCuuC--UGCCG- -5'
29460 3' -54.6 NC_006151.1 + 21472 0.68 0.841887
Target:  5'- -cCCGCGUC-GCCggCUcGGGcAGGCGGCc -3'
miRNA:   3'- aaGGUGUAGuCGGa-GA-CCU-UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 23501 0.77 0.382606
Target:  5'- gUCCAgGUUGGCCUCcaccgacaGGGAGACGGUg -3'
miRNA:   3'- aAGGUgUAGUCGGAGa-------CCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 25359 0.73 0.59489
Target:  5'- -aUCACAUCGGa---UGGGAGGCGGCg -3'
miRNA:   3'- aaGGUGUAGUCggagACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 28161 0.69 0.816049
Target:  5'- aUCCcCGUCGGCgUCguuGGGGCGGCg -3'
miRNA:   3'- aAGGuGUAGUCGgAGaccUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35301 0.68 0.858124
Target:  5'- aUCC-CAUUGGCCgUCgagGGGccaAGAUGGCg -3'
miRNA:   3'- aAGGuGUAGUCGG-AGa--CCU---UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35384 0.67 0.901486
Target:  5'- aUCC-CAUUGGCCgUCgauggGGcAAGAUGGCc -3'
miRNA:   3'- aAGGuGUAGUCGG-AGa----CC-UUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35539 0.66 0.93096
Target:  5'- aUCC-CAUUGGCCggccgUCggGGAAGuccGCGGCg -3'
miRNA:   3'- aAGGuGUAGUCGG-----AGa-CCUUC---UGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35978 0.72 0.615833
Target:  5'- -gCCGCcgCGGCCga-GGAAGAgGGCa -3'
miRNA:   3'- aaGGUGuaGUCGGagaCCUUCUgCCG- -5'
29460 3' -54.6 NC_006151.1 + 36858 0.68 0.824849
Target:  5'- ---gAC-UCGGCCUCgccGggGACGGCg -3'
miRNA:   3'- aaggUGuAGUCGGAGac-CuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 39494 0.66 0.911597
Target:  5'- cUCCGCG-CGGCCgugCUGGAcucuagcuccaucGugGGCc -3'
miRNA:   3'- aAGGUGUaGUCGGa--GACCUu------------CugCCG- -5'
29460 3' -54.6 NC_006151.1 + 39789 0.69 0.779182
Target:  5'- -aCCGCG-CGGCCaaccgCUGGggGcuCGGCg -3'
miRNA:   3'- aaGGUGUaGUCGGa----GACCuuCu-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 40408 0.69 0.816049
Target:  5'- gUCCGCGgcggCGGCCUCgguccccucGGcccGGCGGCg -3'
miRNA:   3'- aAGGUGUa---GUCGGAGa--------CCuu-CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 53714 0.7 0.719923
Target:  5'- -cCCGCGgaAGCCgaacucCUGGAAGAUGGUg -3'
miRNA:   3'- aaGGUGUagUCGGa-----GACCUUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.