Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 141959 | 0.66 | 0.919922 |
Target: 5'- -cCCACGUCcGgCUCUGcGGgauccggucGGGCGGCc -3' miRNA: 3'- aaGGUGUAGuCgGAGAC-CU---------UCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 137439 | 0.66 | 0.90788 |
Target: 5'- gUCCGCcuccgCGGCCUCcuccGAcGACGGCc -3' miRNA: 3'- aAGGUGua---GUCGGAGac--CUuCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 134523 | 0.67 | 0.872753 |
Target: 5'- cUCCgcgGCAUCGucgucuuccccacGCC-CUGGGAGAgCGGCc -3' miRNA: 3'- aAGG---UGUAGU-------------CGGaGACCUUCU-GCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 133086 | 0.69 | 0.807073 |
Target: 5'- -aCCACcgCGGCCUgCaGGAAG-CGGUc -3' miRNA: 3'- aaGGUGuaGUCGGA-GaCCUUCuGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 131097 | 0.69 | 0.769595 |
Target: 5'- gUCCACGUCggcggggggcccGGCCgcggCgcgGGAGGccGCGGCg -3' miRNA: 3'- aAGGUGUAG------------UCGGa---Ga--CCUUC--UGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 127998 | 0.71 | 0.709711 |
Target: 5'- cUCCGCGUCgcGGUCgcgGGgcGGCGGCg -3' miRNA: 3'- aAGGUGUAG--UCGGagaCCuuCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 120055 | 0.66 | 0.93096 |
Target: 5'- cUCCACGggCAGCCcgUGGAGG--GGCg -3' miRNA: 3'- aAGGUGUa-GUCGGagACCUUCugCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 117330 | 0.67 | 0.8735 |
Target: 5'- -gCgGCGUCGGCCUCggccuugcccaGGAAGAaguagUGGCg -3' miRNA: 3'- aaGgUGUAGUCGGAGa----------CCUUCU-----GCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 115006 | 0.66 | 0.93096 |
Target: 5'- --gCGCAUggcCAGCUUgUGGuAGACGGUg -3' miRNA: 3'- aagGUGUA---GUCGGAgACCuUCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 114931 | 0.7 | 0.730055 |
Target: 5'- -gUCGCGcUCGGCCUCcGG-GGugGGCg -3' miRNA: 3'- aaGGUGU-AGUCGGAGaCCuUCugCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 113989 | 0.66 | 0.914026 |
Target: 5'- -aCCACcgugcgCGGCCUCUcGAacccgcucaucaAGACGGCc -3' miRNA: 3'- aaGGUGua----GUCGGAGAcCU------------UCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 109928 | 0.68 | 0.824849 |
Target: 5'- cUCCGCcgcCGGCCUCUccccuGGGCGGCc -3' miRNA: 3'- aAGGUGua-GUCGGAGAccu--UCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 106176 | 0.69 | 0.815159 |
Target: 5'- -aCCGCGUCGcgcacccGCCgCUGGAGccGGCGGUg -3' miRNA: 3'- aaGGUGUAGU-------CGGaGACCUU--CUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 103974 | 0.7 | 0.730055 |
Target: 5'- --gCGCGUCGGCgagCUGGA-GGCGGCc -3' miRNA: 3'- aagGUGUAGUCGga-GACCUuCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 99661 | 0.66 | 0.925566 |
Target: 5'- cUUCCGCGcgCagAGCCgCUGGGGccugcgcgccGACGGCg -3' miRNA: 3'- -AAGGUGUa-G--UCGGaGACCUU----------CUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 99197 | 0.68 | 0.824849 |
Target: 5'- -gCCACG--GGCgUgUGGGAGGCGGUg -3' miRNA: 3'- aaGGUGUagUCGgAgACCUUCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 98692 | 0.73 | 0.59489 |
Target: 5'- -cCCGCGUCGuGCCcCcGGAgcAGACGGCg -3' miRNA: 3'- aaGGUGUAGU-CGGaGaCCU--UCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 91296 | 0.66 | 0.925566 |
Target: 5'- -gCCGCGUCAGCagccgCgccgGGAAGGCGcCg -3' miRNA: 3'- aaGGUGUAGUCGga---Ga---CCUUCUGCcG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 89099 | 0.68 | 0.841887 |
Target: 5'- gUUCCGCGggGGCUUcCUGcgcgagaccGAGGGCGGCg -3' miRNA: 3'- -AAGGUGUagUCGGA-GAC---------CUUCUGCCG- -5' |
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29460 | 3' | -54.6 | NC_006151.1 | + | 79349 | 0.66 | 0.920497 |
Target: 5'- -cCCGCGUCGGCCgaagaaaauauugaUGGAuuauCGGCa -3' miRNA: 3'- aaGGUGUAGUCGGag------------ACCUucu-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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