miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 3' -54.6 NC_006151.1 + 55130 0.71 0.709711
Target:  5'- -gCCACAUCGGCgacaUCacGGAGACGGUg -3'
miRNA:   3'- aaGGUGUAGUCGg---AGacCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 62157 1.1 0.002671
Target:  5'- cUUCCACAUCAGCCUCUGGAAGACGGCg -3'
miRNA:   3'- -AAGGUGUAGUCGGAGACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 64530 0.69 0.779182
Target:  5'- -gCCGCcgCGGCCgCgucGggGGCGGCg -3'
miRNA:   3'- aaGGUGuaGUCGGaGac-CuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 66766 0.68 0.841887
Target:  5'- -gCCGCGaCGGCCgccCUcGGGAcGGCGGCg -3'
miRNA:   3'- aaGGUGUaGUCGGa--GA-CCUU-CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 71618 0.74 0.492994
Target:  5'- -aCCACcgCGGCCUUcucgccggGGggGACGGUc -3'
miRNA:   3'- aaGGUGuaGUCGGAGa-------CCuuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 77421 0.66 0.90788
Target:  5'- gUCCguGCAcCGGCgCUCgcGGGAGAuCGGCa -3'
miRNA:   3'- aAGG--UGUaGUCG-GAGa-CCUUCU-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 78747 0.73 0.563709
Target:  5'- -cCCACGUCcGCCgUCUGcGccGAGGCGGCg -3'
miRNA:   3'- aaGGUGUAGuCGG-AGAC-C--UUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 79349 0.66 0.920497
Target:  5'- -cCCGCGUCGGCCgaagaaaauauugaUGGAuuauCGGCa -3'
miRNA:   3'- aaGGUGUAGUCGGag------------ACCUucu-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 89099 0.68 0.841887
Target:  5'- gUUCCGCGggGGCUUcCUGcgcgagaccGAGGGCGGCg -3'
miRNA:   3'- -AAGGUGUagUCGGA-GAC---------CUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 91296 0.66 0.925566
Target:  5'- -gCCGCGUCAGCagccgCgccgGGAAGGCGcCg -3'
miRNA:   3'- aaGGUGUAGUCGga---Ga---CCUUCUGCcG- -5'
29460 3' -54.6 NC_006151.1 + 98692 0.73 0.59489
Target:  5'- -cCCGCGUCGuGCCcCcGGAgcAGACGGCg -3'
miRNA:   3'- aaGGUGUAGU-CGGaGaCCU--UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 99197 0.68 0.824849
Target:  5'- -gCCACG--GGCgUgUGGGAGGCGGUg -3'
miRNA:   3'- aaGGUGUagUCGgAgACCUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 99661 0.66 0.925566
Target:  5'- cUUCCGCGcgCagAGCCgCUGGGGccugcgcgccGACGGCg -3'
miRNA:   3'- -AAGGUGUa-G--UCGGaGACCUU----------CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 103974 0.7 0.730055
Target:  5'- --gCGCGUCGGCgagCUGGA-GGCGGCc -3'
miRNA:   3'- aagGUGUAGUCGga-GACCUuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 106176 0.69 0.815159
Target:  5'- -aCCGCGUCGcgcacccGCCgCUGGAGccGGCGGUg -3'
miRNA:   3'- aaGGUGUAGU-------CGGaGACCUU--CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 109928 0.68 0.824849
Target:  5'- cUCCGCcgcCGGCCUCUccccuGGGCGGCc -3'
miRNA:   3'- aAGGUGua-GUCGGAGAccu--UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 113989 0.66 0.914026
Target:  5'- -aCCACcgugcgCGGCCUCUcGAacccgcucaucaAGACGGCc -3'
miRNA:   3'- aaGGUGua----GUCGGAGAcCU------------UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 114931 0.7 0.730055
Target:  5'- -gUCGCGcUCGGCCUCcGG-GGugGGCg -3'
miRNA:   3'- aaGGUGU-AGUCGGAGaCCuUCugCCG- -5'
29460 3' -54.6 NC_006151.1 + 115006 0.66 0.93096
Target:  5'- --gCGCAUggcCAGCUUgUGGuAGACGGUg -3'
miRNA:   3'- aagGUGUA---GUCGGAgACCuUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 117330 0.67 0.8735
Target:  5'- -gCgGCGUCGGCCUCggccuugcccaGGAAGAaguagUGGCg -3'
miRNA:   3'- aaGgUGUAGUCGGAGa----------CCUUCU-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.