miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 55513 1.1 0.002376
Target:  5'- gACCUCGGCCACGAGGUCAUCGACAUCa -3'
miRNA:   3'- -UGGAGCCGGUGCUCCAGUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 6141 0.77 0.342464
Target:  5'- gGCCgCGGCCGCGAGGacggcggccucggccUCggCGGCGUCg -3'
miRNA:   3'- -UGGaGCCGGUGCUCC---------------AGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 68001 0.76 0.38746
Target:  5'- cGCCgCGGCCACGGGcUCggCGGCGUCc -3'
miRNA:   3'- -UGGaGCCGGUGCUCcAGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 77527 0.76 0.399301
Target:  5'- cGCCUCGGCCGCGcgugggccgccccgcAGGggagCGaCGACGUCu -3'
miRNA:   3'- -UGGAGCCGGUGC---------------UCCa---GUaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 65621 0.75 0.430787
Target:  5'- gGCCccgaCGGCCACGGGGUCGcccgUGAgGUCg -3'
miRNA:   3'- -UGGa---GCCGGUGCUCCAGUa---GCUgUAG- -5'
29470 3' -56 NC_006151.1 + 774 0.75 0.439789
Target:  5'- cCCUCGcGCCACGcGGUCGccgUCGuCAUCg -3'
miRNA:   3'- uGGAGC-CGGUGCuCCAGU---AGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 99346 0.74 0.486326
Target:  5'- cGCCgUCGGCugCACGGcGGUCGUCGGCGg- -3'
miRNA:   3'- -UGG-AGCCG--GUGCU-CCAGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 126030 0.73 0.525172
Target:  5'- gGCCUCGGCgACGuGGgcgccgcCGUCGGCAa- -3'
miRNA:   3'- -UGGAGCCGgUGCuCCa------GUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 122743 0.73 0.545036
Target:  5'- cGCCcgcgCGGCCGCGAGc---UCGACAUCa -3'
miRNA:   3'- -UGGa---GCCGGUGCUCcaguAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 96650 0.72 0.565136
Target:  5'- -gCUCGGCgGCGAGGgccCGggCGACGUCc -3'
miRNA:   3'- ugGAGCCGgUGCUCCa--GUa-GCUGUAG- -5'
29470 3' -56 NC_006151.1 + 135506 0.72 0.585425
Target:  5'- gGCCUCGGCC--GAGGcCAUC-ACGUCc -3'
miRNA:   3'- -UGGAGCCGGugCUCCaGUAGcUGUAG- -5'
29470 3' -56 NC_006151.1 + 114049 0.72 0.595623
Target:  5'- gACCUCGGCCAgGcGGUgGcCGACAa- -3'
miRNA:   3'- -UGGAGCCGGUgCuCCAgUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 111657 0.72 0.605849
Target:  5'- gGCCgugaucgCGGCCAgGGGGgCGUCGGCGg- -3'
miRNA:   3'- -UGGa------GCCGGUgCUCCaGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 101043 0.71 0.616094
Target:  5'- aGCCaugaCGGCCgacGCGGuGGUCGUCGGCuAUCg -3'
miRNA:   3'- -UGGa---GCCGG---UGCU-CCAGUAGCUG-UAG- -5'
29470 3' -56 NC_006151.1 + 20391 0.71 0.626351
Target:  5'- uCC-CGGgCAcCGGGGUCAUCGcCGUCg -3'
miRNA:   3'- uGGaGCCgGU-GCUCCAGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 72724 0.71 0.636613
Target:  5'- uCCUCGGCCcCGAGGggCGUCcGCAg- -3'
miRNA:   3'- uGGAGCCGGuGCUCCa-GUAGcUGUag -5'
29470 3' -56 NC_006151.1 + 57609 0.71 0.636613
Target:  5'- gGCCUCGGCCGCGGccgCcUCGACGg- -3'
miRNA:   3'- -UGGAGCCGGUGCUccaGuAGCUGUag -5'
29470 3' -56 NC_006151.1 + 133175 0.71 0.646871
Target:  5'- gGCCUCGGCCACGc-GUCccaCGGCcgCg -3'
miRNA:   3'- -UGGAGCCGGUGCucCAGua-GCUGuaG- -5'
29470 3' -56 NC_006151.1 + 78158 0.71 0.657117
Target:  5'- cGCCUCGGCCGcCGuGGUCGagGcCGUg -3'
miRNA:   3'- -UGGAGCCGGU-GCuCCAGUagCuGUAg -5'
29470 3' -56 NC_006151.1 + 60719 0.7 0.684658
Target:  5'- gACCUCGGCCcCGAGGUgccggagcacgaggCAgCGGCGgcUCg -3'
miRNA:   3'- -UGGAGCCGGuGCUCCA--------------GUaGCUGU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.