miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 774 0.75 0.439789
Target:  5'- cCCUCGcGCCACGcGGUCGccgUCGuCAUCg -3'
miRNA:   3'- uGGAGC-CGGUGCuCCAGU---AGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 4811 0.66 0.883494
Target:  5'- gGCCgCGGCCugGcGGaCGUCGuccuCGUCc -3'
miRNA:   3'- -UGGaGCCGGugCuCCaGUAGCu---GUAG- -5'
29470 3' -56 NC_006151.1 + 5074 0.68 0.803383
Target:  5'- gGCCgagGGCCGCGGGG-CcgCGGCGg- -3'
miRNA:   3'- -UGGag-CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 6141 0.77 0.342464
Target:  5'- gGCCgCGGCCGCGAGGacggcggccucggccUCggCGGCGUCg -3'
miRNA:   3'- -UGGaGCCGGUGCUCC---------------AGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 11226 0.68 0.829406
Target:  5'- gGCUUCucccgGGCCGCGAGGgCcgCGGCGg- -3'
miRNA:   3'- -UGGAG-----CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 14180 0.69 0.766546
Target:  5'- cGCC-CGGaCgACGAcGGUgaCGUCGGCAUCg -3'
miRNA:   3'- -UGGaGCC-GgUGCU-CCA--GUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 17155 0.67 0.869079
Target:  5'- cACCU-GGUCGCaGAGGUCggCGGCGc- -3'
miRNA:   3'- -UGGAgCCGGUG-CUCCAGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 18548 0.66 0.890368
Target:  5'- cACCcggaaCGGCCGCGAGGcCGccCGGCGg- -3'
miRNA:   3'- -UGGa----GCCGGUGCUCCaGUa-GCUGUag -5'
29470 3' -56 NC_006151.1 + 19342 0.68 0.803383
Target:  5'- gGCCcgCGGCCcCGAGG-CGUCGuGCAg- -3'
miRNA:   3'- -UGGa-GCCGGuGCUCCaGUAGC-UGUag -5'
29470 3' -56 NC_006151.1 + 19786 0.66 0.890368
Target:  5'- gGCCUCGGUgGaGAGGUCccaGACcUCg -3'
miRNA:   3'- -UGGAGCCGgUgCUCCAGuagCUGuAG- -5'
29470 3' -56 NC_006151.1 + 19828 0.69 0.747371
Target:  5'- gACCUCggugacggGGCC-CGGGGUCGucUCGGCGg- -3'
miRNA:   3'- -UGGAG--------CCGGuGCUCCAGU--AGCUGUag -5'
29470 3' -56 NC_006151.1 + 20391 0.71 0.626351
Target:  5'- uCC-CGGgCAcCGGGGUCAUCGcCGUCg -3'
miRNA:   3'- uGGaGCCgGU-GCUCCAGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 21561 0.67 0.841008
Target:  5'- gGCCUCggcgagcccgccgagGGCCgcGCGGGGUCGaUGGCGUa -3'
miRNA:   3'- -UGGAG---------------CCGG--UGCUCCAGUaGCUGUAg -5'
29470 3' -56 NC_006151.1 + 23906 0.68 0.788916
Target:  5'- gGCgUCGGUCGCGGgcccgacgggccgccGGUCGUCGugGa- -3'
miRNA:   3'- -UGgAGCCGGUGCU---------------CCAGUAGCugUag -5'
29470 3' -56 NC_006151.1 + 25289 0.7 0.707874
Target:  5'- -gCUUGGCCGCGGGGaCGUgGGCGa- -3'
miRNA:   3'- ugGAGCCGGUGCUCCaGUAgCUGUag -5'
29470 3' -56 NC_006151.1 + 35105 0.67 0.849067
Target:  5'- cGCCUCGcGCCcgcGCGAGGgauuuucggacaaucUCAUUGGCGc- -3'
miRNA:   3'- -UGGAGC-CGG---UGCUCC---------------AGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 35980 0.69 0.766546
Target:  5'- cGCCgCGGCCGaggaaGAGGgCAUCG-CGUCc -3'
miRNA:   3'- -UGGaGCCGGUg----CUCCaGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 40089 0.67 0.83773
Target:  5'- cGCCggggcCGGCCccggcgaggACGGGGacucuguggagaUCGUCGGCGUCc -3'
miRNA:   3'- -UGGa----GCCGG---------UGCUCC------------AGUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 46728 0.66 0.899607
Target:  5'- gGCCggggcCGGCC-CGGGGUCGgcgaacaccgccgcuUCGGC-UCg -3'
miRNA:   3'- -UGGa----GCCGGuGCUCCAGU---------------AGCUGuAG- -5'
29470 3' -56 NC_006151.1 + 48383 0.67 0.861547
Target:  5'- -gCUC-GCCACcgGAGGUCAUCcugugGGCGUCg -3'
miRNA:   3'- ugGAGcCGGUG--CUCCAGUAG-----CUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.