miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 142230 0.67 0.853023
Target:  5'- uCCUCGccgggucGCgACGAGG-CGUCGGuCAUCg -3'
miRNA:   3'- uGGAGC-------CGgUGCUCCaGUAGCU-GUAG- -5'
29470 3' -56 NC_006151.1 + 135506 0.72 0.585425
Target:  5'- gGCCUCGGCC--GAGGcCAUC-ACGUCc -3'
miRNA:   3'- -UGGAGCCGGugCUCCaGUAGcUGUAG- -5'
29470 3' -56 NC_006151.1 + 133472 0.68 0.829406
Target:  5'- gGCCcgcgaggCGGCCGCGGGcGUCAccUUGGCGg- -3'
miRNA:   3'- -UGGa------GCCGGUGCUC-CAGU--AGCUGUag -5'
29470 3' -56 NC_006151.1 + 133175 0.71 0.646871
Target:  5'- gGCCUCGGCCACGc-GUCccaCGGCcgCg -3'
miRNA:   3'- -UGGAGCCGGUGCucCAGua-GCUGuaG- -5'
29470 3' -56 NC_006151.1 + 131775 0.67 0.869079
Target:  5'- gACCgCGGCCGCGGGcgccgccgucGUCAgcgCGcCAUCc -3'
miRNA:   3'- -UGGaGCCGGUGCUC----------CAGUa--GCuGUAG- -5'
29470 3' -56 NC_006151.1 + 129892 0.68 0.803383
Target:  5'- cACCUCGGUCGCGuucagcacGG-CGuacUCGGCGUCc -3'
miRNA:   3'- -UGGAGCCGGUGCu-------CCaGU---AGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 126030 0.73 0.525172
Target:  5'- gGCCUCGGCgACGuGGgcgccgcCGUCGGCAa- -3'
miRNA:   3'- -UGGAGCCGgUGCuCCa------GUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 125185 0.67 0.845867
Target:  5'- cGCCUCGGCCuCGccGG-CGUCGugGg- -3'
miRNA:   3'- -UGGAGCCGGuGCu-CCaGUAGCugUag -5'
29470 3' -56 NC_006151.1 + 125101 0.68 0.794386
Target:  5'- uACCUCGcCCGCGGGGgcuUCGugGUg -3'
miRNA:   3'- -UGGAGCcGGUGCUCCaguAGCugUAg -5'
29470 3' -56 NC_006151.1 + 122743 0.73 0.545036
Target:  5'- cGCCcgcgCGGCCGCGAGc---UCGACAUCa -3'
miRNA:   3'- -UGGa---GCCGGUGCUCcaguAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 116850 0.68 0.820902
Target:  5'- uUCUCGGCgGCGGGGaaggCcgCGuCGUCg -3'
miRNA:   3'- uGGAGCCGgUGCUCCa---GuaGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 116404 0.68 0.812225
Target:  5'- uCCUCGGCCACGGcGUUGagcuuguagcUCGGCAg- -3'
miRNA:   3'- uGGAGCCGGUGCUcCAGU----------AGCUGUag -5'
29470 3' -56 NC_006151.1 + 114049 0.72 0.595623
Target:  5'- gACCUCGGCCAgGcGGUgGcCGACAa- -3'
miRNA:   3'- -UGGAGCCGGUgCuCCAgUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 111657 0.72 0.605849
Target:  5'- gGCCgugaucgCGGCCAgGGGGgCGUCGGCGg- -3'
miRNA:   3'- -UGGa------GCCGGUgCUCCaGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 101043 0.71 0.616094
Target:  5'- aGCCaugaCGGCCgacGCGGuGGUCGUCGGCuAUCg -3'
miRNA:   3'- -UGGa---GCCGG---UGCU-CCAGUAGCUG-UAG- -5'
29470 3' -56 NC_006151.1 + 99346 0.74 0.486326
Target:  5'- cGCCgUCGGCugCACGGcGGUCGUCGGCGg- -3'
miRNA:   3'- -UGG-AGCCG--GUGCU-CCAGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 96650 0.72 0.565136
Target:  5'- -gCUCGGCgGCGAGGgccCGggCGACGUCc -3'
miRNA:   3'- ugGAGCCGgUGCUCCa--GUa-GCUGUAG- -5'
29470 3' -56 NC_006151.1 + 96582 0.67 0.86982
Target:  5'- cGCCUCGcGgCGCGAGGcgccgggcgcgggcgCGcCGACGUCg -3'
miRNA:   3'- -UGGAGC-CgGUGCUCCa--------------GUaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 92575 0.67 0.83773
Target:  5'- cGCUggagGGCCGCGAGGUggccccCGagGACGUCa -3'
miRNA:   3'- -UGGag--CCGGUGCUCCA------GUagCUGUAG- -5'
29470 3' -56 NC_006151.1 + 88471 0.7 0.686687
Target:  5'- aGCUcgUCGGCCACGGugcuguuGGUCAcgaaggCGGCGUCc -3'
miRNA:   3'- -UGG--AGCCGGUGCU-------CCAGUa-----GCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.