miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 52330 0.7 0.707874
Target:  5'- uUCUCGcugagcGCCGCaaaGAGGUCGUCGuCGUCg -3'
miRNA:   3'- uGGAGC------CGGUG---CUCCAGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 55513 1.1 0.002376
Target:  5'- gACCUCGGCCACGAGGUCAUCGACAUCa -3'
miRNA:   3'- -UGGAGCCGGUGCUCCAGUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 57249 0.66 0.909607
Target:  5'- gGCCUCGGCgucCGCGcGGcCcUCGACGg- -3'
miRNA:   3'- -UGGAGCCG---GUGCuCCaGuAGCUGUag -5'
29470 3' -56 NC_006151.1 + 57506 0.66 0.876396
Target:  5'- cGCgCUCGGCCGCGGcGG-CggCGGCcgCc -3'
miRNA:   3'- -UG-GAGCCGGUGCU-CCaGuaGCUGuaG- -5'
29470 3' -56 NC_006151.1 + 57609 0.71 0.636613
Target:  5'- gGCCUCGGCCGCGGccgCcUCGACGg- -3'
miRNA:   3'- -UGGAGCCGGUGCUccaGuAGCUGUag -5'
29470 3' -56 NC_006151.1 + 58439 0.66 0.909607
Target:  5'- cGCCUCGGUgGCGuGcGcgCGcgCGGCGUCg -3'
miRNA:   3'- -UGGAGCCGgUGCuC-Ca-GUa-GCUGUAG- -5'
29470 3' -56 NC_006151.1 + 59778 0.67 0.83773
Target:  5'- cACgUCGGCCACGAGGUacuUCucCAc- -3'
miRNA:   3'- -UGgAGCCGGUGCUCCAgu-AGcuGUag -5'
29470 3' -56 NC_006151.1 + 60719 0.7 0.684658
Target:  5'- gACCUCGGCCcCGAGGUgccggagcacgaggCAgCGGCGgcUCg -3'
miRNA:   3'- -UGGAGCCGGuGCUCCA--------------GUaGCUGU--AG- -5'
29470 3' -56 NC_006151.1 + 61354 0.67 0.869079
Target:  5'- cACCaCGGCCGgGAGGUCGcaacCGuauaGCAUCc -3'
miRNA:   3'- -UGGaGCCGGUgCUCCAGUa---GC----UGUAG- -5'
29470 3' -56 NC_006151.1 + 64624 0.68 0.803383
Target:  5'- cGCCgcCGGCCGCGGGG-CG-CGGCGc- -3'
miRNA:   3'- -UGGa-GCCGGUGCUCCaGUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 65621 0.75 0.430787
Target:  5'- gGCCccgaCGGCCACGGGGUCGcccgUGAgGUCg -3'
miRNA:   3'- -UGGa---GCCGGUGCUCCAGUa---GCUgUAG- -5'
29470 3' -56 NC_006151.1 + 65983 0.69 0.766546
Target:  5'- uCCUCgccGGCCGCGAGcGcguccUCcgCGGCGUCg -3'
miRNA:   3'- uGGAG---CCGGUGCUC-C-----AGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 68001 0.76 0.38746
Target:  5'- cGCCgCGGCCACGGGcUCggCGGCGUCc -3'
miRNA:   3'- -UGGaGCCGGUGCUCcAGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 69597 0.67 0.856928
Target:  5'- -gCUCGGCCGCGcggcgcaccagcgacAGGaUCucgcgGUCGGCGUCc -3'
miRNA:   3'- ugGAGCCGGUGC---------------UCC-AG-----UAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 72724 0.71 0.636613
Target:  5'- uCCUCGGCCcCGAGGggCGUCcGCAg- -3'
miRNA:   3'- uGGAGCCGGuGCUCCa-GUAGcUGUag -5'
29470 3' -56 NC_006151.1 + 73799 0.68 0.824325
Target:  5'- cACCUCGGCgccCAcgucgcgcauggcgcCGAGGUgGUCGGCGc- -3'
miRNA:   3'- -UGGAGCCG---GU---------------GCUCCAgUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 77527 0.76 0.399301
Target:  5'- cGCCUCGGCCGCGcgugggccgccccgcAGGggagCGaCGACGUCu -3'
miRNA:   3'- -UGGAGCCGGUGC---------------UCCa---GUaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 78158 0.71 0.657117
Target:  5'- cGCCUCGGCCGcCGuGGUCGagGcCGUg -3'
miRNA:   3'- -UGGAGCCGGU-GCuCCAGUagCuGUAg -5'
29470 3' -56 NC_006151.1 + 85390 0.68 0.785241
Target:  5'- aACgUCGGCgccaACGAGGUCGaCGGCGc- -3'
miRNA:   3'- -UGgAGCCGg---UGCUCCAGUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 88402 0.69 0.737626
Target:  5'- uCCgCGGCCGCGAGGcCcggGACGUCc -3'
miRNA:   3'- uGGaGCCGGUGCUCCaGuagCUGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.