Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29470 | 3' | -56 | NC_006151.1 | + | 52330 | 0.7 | 0.707874 |
Target: 5'- uUCUCGcugagcGCCGCaaaGAGGUCGUCGuCGUCg -3' miRNA: 3'- uGGAGC------CGGUG---CUCCAGUAGCuGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 55513 | 1.1 | 0.002376 |
Target: 5'- gACCUCGGCCACGAGGUCAUCGACAUCa -3' miRNA: 3'- -UGGAGCCGGUGCUCCAGUAGCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 57249 | 0.66 | 0.909607 |
Target: 5'- gGCCUCGGCgucCGCGcGGcCcUCGACGg- -3' miRNA: 3'- -UGGAGCCG---GUGCuCCaGuAGCUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 57506 | 0.66 | 0.876396 |
Target: 5'- cGCgCUCGGCCGCGGcGG-CggCGGCcgCc -3' miRNA: 3'- -UG-GAGCCGGUGCU-CCaGuaGCUGuaG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 57609 | 0.71 | 0.636613 |
Target: 5'- gGCCUCGGCCGCGGccgCcUCGACGg- -3' miRNA: 3'- -UGGAGCCGGUGCUccaGuAGCUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 58439 | 0.66 | 0.909607 |
Target: 5'- cGCCUCGGUgGCGuGcGcgCGcgCGGCGUCg -3' miRNA: 3'- -UGGAGCCGgUGCuC-Ca-GUa-GCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 59778 | 0.67 | 0.83773 |
Target: 5'- cACgUCGGCCACGAGGUacuUCucCAc- -3' miRNA: 3'- -UGgAGCCGGUGCUCCAgu-AGcuGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 60719 | 0.7 | 0.684658 |
Target: 5'- gACCUCGGCCcCGAGGUgccggagcacgaggCAgCGGCGgcUCg -3' miRNA: 3'- -UGGAGCCGGuGCUCCA--------------GUaGCUGU--AG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 61354 | 0.67 | 0.869079 |
Target: 5'- cACCaCGGCCGgGAGGUCGcaacCGuauaGCAUCc -3' miRNA: 3'- -UGGaGCCGGUgCUCCAGUa---GC----UGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 64624 | 0.68 | 0.803383 |
Target: 5'- cGCCgcCGGCCGCGGGG-CG-CGGCGc- -3' miRNA: 3'- -UGGa-GCCGGUGCUCCaGUaGCUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 65621 | 0.75 | 0.430787 |
Target: 5'- gGCCccgaCGGCCACGGGGUCGcccgUGAgGUCg -3' miRNA: 3'- -UGGa---GCCGGUGCUCCAGUa---GCUgUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 65983 | 0.69 | 0.766546 |
Target: 5'- uCCUCgccGGCCGCGAGcGcguccUCcgCGGCGUCg -3' miRNA: 3'- uGGAG---CCGGUGCUC-C-----AGuaGCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 68001 | 0.76 | 0.38746 |
Target: 5'- cGCCgCGGCCACGGGcUCggCGGCGUCc -3' miRNA: 3'- -UGGaGCCGGUGCUCcAGuaGCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 69597 | 0.67 | 0.856928 |
Target: 5'- -gCUCGGCCGCGcggcgcaccagcgacAGGaUCucgcgGUCGGCGUCc -3' miRNA: 3'- ugGAGCCGGUGC---------------UCC-AG-----UAGCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 72724 | 0.71 | 0.636613 |
Target: 5'- uCCUCGGCCcCGAGGggCGUCcGCAg- -3' miRNA: 3'- uGGAGCCGGuGCUCCa-GUAGcUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 73799 | 0.68 | 0.824325 |
Target: 5'- cACCUCGGCgccCAcgucgcgcauggcgcCGAGGUgGUCGGCGc- -3' miRNA: 3'- -UGGAGCCG---GU---------------GCUCCAgUAGCUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 77527 | 0.76 | 0.399301 |
Target: 5'- cGCCUCGGCCGCGcgugggccgccccgcAGGggagCGaCGACGUCu -3' miRNA: 3'- -UGGAGCCGGUGC---------------UCCa---GUaGCUGUAG- -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 78158 | 0.71 | 0.657117 |
Target: 5'- cGCCUCGGCCGcCGuGGUCGagGcCGUg -3' miRNA: 3'- -UGGAGCCGGU-GCuCCAGUagCuGUAg -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 85390 | 0.68 | 0.785241 |
Target: 5'- aACgUCGGCgccaACGAGGUCGaCGGCGc- -3' miRNA: 3'- -UGgAGCCGg---UGCUCCAGUaGCUGUag -5' |
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29470 | 3' | -56 | NC_006151.1 | + | 88402 | 0.69 | 0.737626 |
Target: 5'- uCCgCGGCCGCGAGGcCcggGACGUCc -3' miRNA: 3'- uGGaGCCGGUGCUCCaGuagCUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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