miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 133472 0.68 0.829406
Target:  5'- gGCCcgcgaggCGGCCGCGGGcGUCAccUUGGCGg- -3'
miRNA:   3'- -UGGa------GCCGGUGCUC-CAGU--AGCUGUag -5'
29470 3' -56 NC_006151.1 + 11226 0.68 0.829406
Target:  5'- gGCUUCucccgGGCCGCGAGGgCcgCGGCGg- -3'
miRNA:   3'- -UGGAG-----CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 73799 0.68 0.824325
Target:  5'- cACCUCGGCgccCAcgucgcgcauggcgcCGAGGUgGUCGGCGc- -3'
miRNA:   3'- -UGGAGCCG---GU---------------GCUCCAgUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 116850 0.68 0.820902
Target:  5'- uUCUCGGCgGCGGGGaaggCcgCGuCGUCg -3'
miRNA:   3'- uGGAGCCGgUGCUCCa---GuaGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 116404 0.68 0.812225
Target:  5'- uCCUCGGCCACGGcGUUGagcuuguagcUCGGCAg- -3'
miRNA:   3'- uGGAGCCGGUGCUcCAGU----------AGCUGUag -5'
29470 3' -56 NC_006151.1 + 19342 0.68 0.803383
Target:  5'- gGCCcgCGGCCcCGAGG-CGUCGuGCAg- -3'
miRNA:   3'- -UGGa-GCCGGuGCUCCaGUAGC-UGUag -5'
29470 3' -56 NC_006151.1 + 5074 0.68 0.803383
Target:  5'- gGCCgagGGCCGCGGGG-CcgCGGCGg- -3'
miRNA:   3'- -UGGag-CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 64624 0.68 0.803383
Target:  5'- cGCCgcCGGCCGCGGGG-CG-CGGCGc- -3'
miRNA:   3'- -UGGa-GCCGGUGCUCCaGUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 129892 0.68 0.803383
Target:  5'- cACCUCGGUCGCGuucagcacGG-CGuacUCGGCGUCc -3'
miRNA:   3'- -UGGAGCCGGUGCu-------CCaGU---AGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 125101 0.68 0.794386
Target:  5'- uACCUCGcCCGCGGGGgcuUCGugGUg -3'
miRNA:   3'- -UGGAGCcGGUGCUCCaguAGCugUAg -5'
29470 3' -56 NC_006151.1 + 23906 0.68 0.788916
Target:  5'- gGCgUCGGUCGCGGgcccgacgggccgccGGUCGUCGugGa- -3'
miRNA:   3'- -UGgAGCCGGUGCU---------------CCAGUAGCugUag -5'
29470 3' -56 NC_006151.1 + 85390 0.68 0.785241
Target:  5'- aACgUCGGCgccaACGAGGUCGaCGGCGc- -3'
miRNA:   3'- -UGgAGCCGg---UGCUCCAGUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 14180 0.69 0.766546
Target:  5'- cGCC-CGGaCgACGAcGGUgaCGUCGGCAUCg -3'
miRNA:   3'- -UGGaGCC-GgUGCU-CCA--GUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 65983 0.69 0.766546
Target:  5'- uCCUCgccGGCCGCGAGcGcguccUCcgCGGCGUCg -3'
miRNA:   3'- uGGAG---CCGGUGCUC-C-----AGuaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 35980 0.69 0.766546
Target:  5'- cGCCgCGGCCGaggaaGAGGgCAUCG-CGUCc -3'
miRNA:   3'- -UGGaGCCGGUg----CUCCaGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 19828 0.69 0.747371
Target:  5'- gACCUCggugacggGGCC-CGGGGUCGucUCGGCGg- -3'
miRNA:   3'- -UGGAG--------CCGGuGCUCCAGU--AGCUGUag -5'
29470 3' -56 NC_006151.1 + 88402 0.69 0.737626
Target:  5'- uCCgCGGCCGCGAGGcCcggGACGUCc -3'
miRNA:   3'- uGGaGCCGGUGCUCCaGuagCUGUAG- -5'
29470 3' -56 NC_006151.1 + 25289 0.7 0.707874
Target:  5'- -gCUUGGCCGCGGGGaCGUgGGCGa- -3'
miRNA:   3'- ugGAGCCGGUGCUCCaGUAgCUGUag -5'
29470 3' -56 NC_006151.1 + 52330 0.7 0.707874
Target:  5'- uUCUCGcugagcGCCGCaaaGAGGUCGUCGuCGUCg -3'
miRNA:   3'- uGGAGC------CGGUG---CUCCAGUAGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 88471 0.7 0.686687
Target:  5'- aGCUcgUCGGCCACGGugcuguuGGUCAcgaaggCGGCGUCc -3'
miRNA:   3'- -UGG--AGCCGGUGCU-------CCAGUa-----GCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.