miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 55513 1.1 0.002376
Target:  5'- gACCUCGGCCACGAGGUCAUCGACAUCa -3'
miRNA:   3'- -UGGAGCCGGUGCUCCAGUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 17155 0.67 0.869079
Target:  5'- cACCU-GGUCGCaGAGGUCggCGGCGc- -3'
miRNA:   3'- -UGGAgCCGGUG-CUCCAGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 57249 0.66 0.909607
Target:  5'- gGCCUCGGCgucCGCGcGGcCcUCGACGg- -3'
miRNA:   3'- -UGGAGCCG---GUGCuCCaGuAGCUGUag -5'
29470 3' -56 NC_006151.1 + 46728 0.66 0.899607
Target:  5'- gGCCggggcCGGCC-CGGGGUCGgcgaacaccgccgcuUCGGC-UCg -3'
miRNA:   3'- -UGGa----GCCGGuGCUCCAGU---------------AGCUGuAG- -5'
29470 3' -56 NC_006151.1 + 19786 0.66 0.890368
Target:  5'- gGCCUCGGUgGaGAGGUCccaGACcUCg -3'
miRNA:   3'- -UGGAGCCGgUgCUCCAGuagCUGuAG- -5'
29470 3' -56 NC_006151.1 + 18548 0.66 0.890368
Target:  5'- cACCcggaaCGGCCGCGAGGcCGccCGGCGg- -3'
miRNA:   3'- -UGGa----GCCGGUGCUCCaGUa-GCUGUag -5'
29470 3' -56 NC_006151.1 + 4811 0.66 0.883494
Target:  5'- gGCCgCGGCCugGcGGaCGUCGuccuCGUCc -3'
miRNA:   3'- -UGGaGCCGGugCuCCaGUAGCu---GUAG- -5'
29470 3' -56 NC_006151.1 + 57506 0.66 0.876396
Target:  5'- cGCgCUCGGCCGCGGcGG-CggCGGCcgCc -3'
miRNA:   3'- -UG-GAGCCGGUGCU-CCaGuaGCUGuaG- -5'
29470 3' -56 NC_006151.1 + 96582 0.67 0.86982
Target:  5'- cGCCUCGcGgCGCGAGGcgccgggcgcgggcgCGcCGACGUCg -3'
miRNA:   3'- -UGGAGC-CgGUGCUCCa--------------GUaGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 61354 0.67 0.869079
Target:  5'- cACCaCGGCCGgGAGGUCGcaacCGuauaGCAUCc -3'
miRNA:   3'- -UGGaGCCGGUgCUCCAGUa---GC----UGUAG- -5'
29470 3' -56 NC_006151.1 + 131775 0.67 0.869079
Target:  5'- gACCgCGGCCGCGGGcgccgccgucGUCAgcgCGcCAUCc -3'
miRNA:   3'- -UGGaGCCGGUGCUC----------CAGUa--GCuGUAG- -5'
29470 3' -56 NC_006151.1 + 58439 0.66 0.909607
Target:  5'- cGCCUCGGUgGCGuGcGcgCGcgCGGCGUCg -3'
miRNA:   3'- -UGGAGCCGgUGCuC-Ca-GUa-GCUGUAG- -5'
29470 3' -56 NC_006151.1 + 48383 0.67 0.861547
Target:  5'- -gCUC-GCCACcgGAGGUCAUCcugugGGCGUCg -3'
miRNA:   3'- ugGAGcCGGUG--CUCCAGUAG-----CUGUAG- -5'
29470 3' -56 NC_006151.1 + 69597 0.67 0.856928
Target:  5'- -gCUCGGCCGCGcggcgcaccagcgacAGGaUCucgcgGUCGGCGUCc -3'
miRNA:   3'- ugGAGCCGGUGC---------------UCC-AG-----UAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 142230 0.67 0.853023
Target:  5'- uCCUCGccgggucGCgACGAGG-CGUCGGuCAUCg -3'
miRNA:   3'- uGGAGC-------CGgUGCUCCaGUAGCU-GUAG- -5'
29470 3' -56 NC_006151.1 + 35105 0.67 0.849067
Target:  5'- cGCCUCGcGCCcgcGCGAGGgauuuucggacaaucUCAUUGGCGc- -3'
miRNA:   3'- -UGGAGC-CGG---UGCUCC---------------AGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 125185 0.67 0.845867
Target:  5'- cGCCUCGGCCuCGccGG-CGUCGugGg- -3'
miRNA:   3'- -UGGAGCCGGuGCu-CCaGUAGCugUag -5'
29470 3' -56 NC_006151.1 + 21561 0.67 0.841008
Target:  5'- gGCCUCggcgagcccgccgagGGCCgcGCGGGGUCGaUGGCGUa -3'
miRNA:   3'- -UGGAG---------------CCGG--UGCUCCAGUaGCUGUAg -5'
29470 3' -56 NC_006151.1 + 92575 0.67 0.83773
Target:  5'- cGCUggagGGCCGCGAGGUggccccCGagGACGUCa -3'
miRNA:   3'- -UGGag--CCGGUGCUCCA------GUagCUGUAG- -5'
29470 3' -56 NC_006151.1 + 40089 0.67 0.83773
Target:  5'- cGCCggggcCGGCCccggcgaggACGGGGacucuguggagaUCGUCGGCGUCc -3'
miRNA:   3'- -UGGa----GCCGG---------UGCUCC------------AGUAGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.