miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 81264 0.67 0.746793
Target:  5'- aGGGCGAgCaGCGCCUcgGCGgggaucucgGGCgCGGCg -3'
miRNA:   3'- aCCCGCU-GcUGCGGA--UGCa--------CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 41472 0.67 0.745837
Target:  5'- cGGGacgaugaCGACGGCGaCC-GCGUGGCgCGAg -3'
miRNA:   3'- aCCC-------GCUGCUGC-GGaUGCACCG-GUUg -5'
29470 5' -58.6 NC_006151.1 + 55392 0.67 0.737193
Target:  5'- gGaGGUG-CGGCGCCUGCGcgagcaGGCCcuGCg -3'
miRNA:   3'- aC-CCGCuGCUGCGGAUGCa-----CCGGu-UG- -5'
29470 5' -58.6 NC_006151.1 + 121863 0.67 0.737193
Target:  5'- aGGcGCaGACGACGCCgcucACGUGcGCgCuGCg -3'
miRNA:   3'- aCC-CG-CUGCUGCGGa---UGCAC-CG-GuUG- -5'
29470 5' -58.6 NC_006151.1 + 40141 0.67 0.737193
Target:  5'- cGcGGCGGCGACgGCCggcccCGcGGCCcGCu -3'
miRNA:   3'- aC-CCGCUGCUG-CGGau---GCaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 76644 0.67 0.737193
Target:  5'- gUGuGGCGACGAcCGCgUGCG-GGCgCGuguGCg -3'
miRNA:   3'- -AC-CCGCUGCU-GCGgAUGCaCCG-GU---UG- -5'
29470 5' -58.6 NC_006151.1 + 70792 0.67 0.737193
Target:  5'- cGGcacCGGCGugGCCguCGUGGgCAGCu -3'
miRNA:   3'- aCCc--GCUGCugCGGauGCACCgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 3571 0.67 0.727503
Target:  5'- aGGGa-GCGGCGCUUGCGccggGGCCc-- -3'
miRNA:   3'- aCCCgcUGCUGCGGAUGCa---CCGGuug -5'
29470 5' -58.6 NC_006151.1 + 64481 0.67 0.727503
Target:  5'- cGcGGCGGgGACGCCcgcggGCGcGGgCGGCg -3'
miRNA:   3'- aC-CCGCUgCUGCGGa----UGCaCCgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 70713 0.67 0.727503
Target:  5'- -cGGUGGCcaaccgcCGCCUGC-UGGCCGGCa -3'
miRNA:   3'- acCCGCUGcu-----GCGGAUGcACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 92318 0.67 0.727503
Target:  5'- gGaGGCgGACGACGUCUGC---GCCAACc -3'
miRNA:   3'- aC-CCG-CUGCUGCGGAUGcacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 78414 0.67 0.727503
Target:  5'- cGGGCcGCGAgCGCC---GUGGCCcACg -3'
miRNA:   3'- aCCCGcUGCU-GCGGaugCACCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 89510 0.67 0.727503
Target:  5'- cGGGUGugG-CGCagcggACGUGGUCcGCc -3'
miRNA:   3'- aCCCGCugCuGCGga---UGCACCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 106464 0.67 0.725555
Target:  5'- cGGaGCuGugGGCGCCcuggGCGcacacggagacgGGCCAGCg -3'
miRNA:   3'- aCC-CG-CugCUGCGGa---UGCa-----------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 18050 0.67 0.717733
Target:  5'- gGGGCGcaGCGGgGagcggggucCCUugGgGGCCAGCa -3'
miRNA:   3'- aCCCGC--UGCUgC---------GGAugCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 81414 0.67 0.717733
Target:  5'- aGGGUGGCGucccCGCCgagguCGcGGCgCAGCg -3'
miRNA:   3'- aCCCGCUGCu---GCGGau---GCaCCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 2232 0.67 0.717733
Target:  5'- -cGGCGGCGGCGCggACGcUGGUCu-- -3'
miRNA:   3'- acCCGCUGCUGCGgaUGC-ACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 31617 0.67 0.717733
Target:  5'- cUGGGCGGgGAUGCC-GCGccGGCaCGAg -3'
miRNA:   3'- -ACCCGCUgCUGCGGaUGCa-CCG-GUUg -5'
29470 5' -58.6 NC_006151.1 + 35318 0.67 0.717733
Target:  5'- gGGGCcaaGAUGGCGCCcuCGgGGCCGGa -3'
miRNA:   3'- aCCCG---CUGCUGCGGauGCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 18159 0.67 0.707892
Target:  5'- gGGGCGGCGGCggGCaugucggaaUGCGggcgGGCCGGu -3'
miRNA:   3'- aCCCGCUGCUG--CGg--------AUGCa---CCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.