miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 101482 0.66 0.764756
Target:  5'- cGcGGCGACGuCGUgUACGUcuucgacccgcacGGCCAcggGCa -3'
miRNA:   3'- aC-CCGCUGCuGCGgAUGCA-------------CCGGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 101166 0.66 0.763821
Target:  5'- -cGGCGugGAgGCCgcccugacGGCCGACg -3'
miRNA:   3'- acCCGCugCUgCGGaugca---CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 104274 0.67 0.760067
Target:  5'- cGcGGCGGCGggcccgccgcugcagGCGCUgcagcggcugACGUGGCuCGACg -3'
miRNA:   3'- aC-CCGCUGC---------------UGCGGa---------UGCACCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 18851 0.67 0.756295
Target:  5'- gGuGGCGACGugGCCguUGUgGGUCAucACg -3'
miRNA:   3'- aC-CCGCUGCugCGGauGCA-CCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 83444 0.67 0.756295
Target:  5'- cGGGCaGCGugGCC-GCcaGGCCcACg -3'
miRNA:   3'- aCCCGcUGCugCGGaUGcaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 112462 0.67 0.756295
Target:  5'- cUGGaGCGAgGACGCCUuCGagGcGCCGuACa -3'
miRNA:   3'- -ACC-CGCUgCUGCGGAuGCa-C-CGGU-UG- -5'
29470 5' -58.6 NC_006151.1 + 98341 0.67 0.756295
Target:  5'- cGGGCcGCGAgaCGCCcGCG-GGCguGCg -3'
miRNA:   3'- aCCCGcUGCU--GCGGaUGCaCCGguUG- -5'
29470 5' -58.6 NC_006151.1 + 120104 0.67 0.756295
Target:  5'- cGGuGCuGCGcCGCC-GCGUGGUgGACa -3'
miRNA:   3'- aCC-CGcUGCuGCGGaUGCACCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 128803 0.67 0.756295
Target:  5'- -cGGCGagcGCGGCGC--GCGUGGCCccguACg -3'
miRNA:   3'- acCCGC---UGCUGCGgaUGCACCGGu---UG- -5'
29470 5' -58.6 NC_006151.1 + 55250 0.67 0.756295
Target:  5'- -cGGUGcAgGACGCCUuccgcaccucCGUGGUCAACa -3'
miRNA:   3'- acCCGC-UgCUGCGGAu---------GCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 106695 0.67 0.756295
Target:  5'- cGGGCGcCGGCGaCCUGuacgcgccCGUGGgCAcggGCa -3'
miRNA:   3'- aCCCGCuGCUGC-GGAU--------GCACCgGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 123119 0.67 0.756295
Target:  5'- -cGGCGGCGA-GCCUggcgcaguGCGUGcGCgAGCa -3'
miRNA:   3'- acCCGCUGCUgCGGA--------UGCAC-CGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 73784 0.67 0.754403
Target:  5'- cUGGGCGGCGGCGCgcacCUcggcgcccacgucGCGcauggcgccgaggUGGUCGGCg -3'
miRNA:   3'- -ACCCGCUGCUGCG----GA-------------UGC-------------ACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 19275 0.67 0.746793
Target:  5'- cGuGGCGcGCGGgGCCcACcggGGCCAGCg -3'
miRNA:   3'- aC-CCGC-UGCUgCGGaUGca-CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 25124 0.67 0.746793
Target:  5'- cUGGGCGugGACGCgcgacaaccccCUGC-UGaGcCCGGCa -3'
miRNA:   3'- -ACCCGCugCUGCG-----------GAUGcAC-C-GGUUG- -5'
29470 5' -58.6 NC_006151.1 + 58120 0.67 0.746793
Target:  5'- cGGGCGGgGucgcgucgcccGCGCCgUACGcGGCCGc- -3'
miRNA:   3'- aCCCGCUgC-----------UGCGG-AUGCaCCGGUug -5'
29470 5' -58.6 NC_006151.1 + 91565 0.67 0.746793
Target:  5'- gGGGCGAUGGCGgCgcgcGCGUGcuCCAGg -3'
miRNA:   3'- aCCCGCUGCUGCgGa---UGCACc-GGUUg -5'
29470 5' -58.6 NC_006151.1 + 127333 0.67 0.746793
Target:  5'- cGGGCGGgGGUGCUgguacACGUGGUCGGu -3'
miRNA:   3'- aCCCGCUgCUGCGGa----UGCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 137140 0.67 0.746793
Target:  5'- cGGcGCGACGcgGCGCCggaGaUGGCCGcGCa -3'
miRNA:   3'- aCC-CGCUGC--UGCGGaugC-ACCGGU-UG- -5'
29470 5' -58.6 NC_006151.1 + 57927 0.67 0.746793
Target:  5'- aGGGCGugGAaggcgcggaaGCCgagcGCG-GGCCAc- -3'
miRNA:   3'- aCCCGCugCUg---------CGGa---UGCaCCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.