miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 122963 0.66 0.784126
Target:  5'- gGGGCG-CgGACGCCggcgACGggGGCguCGGCg -3'
miRNA:   3'- aCCCGCuG-CUGCGGa---UGCa-CCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 51224 0.66 0.783216
Target:  5'- cGGGCccgcgcaGGCGGCGCgaGCGcucGGCgCAGCu -3'
miRNA:   3'- aCCCG-------CUGCUGCGgaUGCa--CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 68265 0.66 0.783216
Target:  5'- cGcGGCGACGgucgcggcgccggGCGCC-ACGgcGGCCAGg -3'
miRNA:   3'- aC-CCGCUGC-------------UGCGGaUGCa-CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 64964 0.66 0.782305
Target:  5'- cGGGCGcaggcCGAgCGCCacguccagcagcACGUGGcCCAGCg -3'
miRNA:   3'- aCCCGCu----GCU-GCGGa-----------UGCACC-GGUUG- -5'
29470 5' -58.6 NC_006151.1 + 75214 0.66 0.774971
Target:  5'- aGGGCGuCGGgGCgcGCGUcGGCCAc- -3'
miRNA:   3'- aCCCGCuGCUgCGgaUGCA-CCGGUug -5'
29470 5' -58.6 NC_006151.1 + 56992 0.66 0.774971
Target:  5'- aGGGCGGCGAagauggGCUccAUGUgGGCCAGa -3'
miRNA:   3'- aCCCGCUGCUg-----CGGa-UGCA-CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 73055 0.66 0.774971
Target:  5'- gGGGUGcGCGGgGUCcGCGUGGCUg-- -3'
miRNA:   3'- aCCCGC-UGCUgCGGaUGCACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 33121 0.66 0.774971
Target:  5'- cUGGGCG-CG-UGCC-GCG-GGCCGAg -3'
miRNA:   3'- -ACCCGCuGCuGCGGaUGCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 50465 0.66 0.774971
Target:  5'- cGGGCGcuCG-CGCCaGCGcGGCgCGACc -3'
miRNA:   3'- aCCCGCu-GCuGCGGaUGCaCCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 73255 0.66 0.774971
Target:  5'- cGGGC-ACgGGCGCCagGCGguuGCCGGCg -3'
miRNA:   3'- aCCCGcUG-CUGCGGa-UGCac-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 114900 0.66 0.774971
Target:  5'- cGGGCG-CGAgGCCcggGCGcacGGCCccGGCg -3'
miRNA:   3'- aCCCGCuGCUgCGGa--UGCa--CCGG--UUG- -5'
29470 5' -58.6 NC_006151.1 + 129400 0.66 0.774971
Target:  5'- cUGGGUGGCG-CGCg-GCGUauucggcgaGGUCGACg -3'
miRNA:   3'- -ACCCGCUGCuGCGgaUGCA---------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 135489 0.66 0.774971
Target:  5'- cGGGCcaGGCGGCGC--GCGgccucGGCCGAg -3'
miRNA:   3'- aCCCG--CUGCUGCGgaUGCa----CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 89442 0.66 0.774048
Target:  5'- -uGGCGACGgucacguACGCCUGCaccagcagGGCCcGCg -3'
miRNA:   3'- acCCGCUGC-------UGCGGAUGca------CCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 113645 0.66 0.765691
Target:  5'- aGcGCGGCGACGCgCUGCGcaaGGCgCAGa -3'
miRNA:   3'- aCcCGCUGCUGCG-GAUGCa--CCG-GUUg -5'
29470 5' -58.6 NC_006151.1 + 10207 0.66 0.765691
Target:  5'- cGGGCGGCGGCuGCagagGCGgcuGCgGACg -3'
miRNA:   3'- aCCCGCUGCUG-CGga--UGCac-CGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 26332 0.66 0.765691
Target:  5'- gGGGCGAgGccCGCCUcACG-GGgCGGCg -3'
miRNA:   3'- aCCCGCUgCu-GCGGA-UGCaCCgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 54404 0.66 0.765691
Target:  5'- cGcGGCcuCGGCGCCgagGCGcUGGCgCGGCg -3'
miRNA:   3'- aC-CCGcuGCUGCGGa--UGC-ACCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 104439 0.66 0.765691
Target:  5'- gGGGCGcuucagcuacuACGACGCCgugggcuuCGUcggGGCgGACa -3'
miRNA:   3'- aCCCGC-----------UGCUGCGGau------GCA---CCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 130368 0.66 0.765691
Target:  5'- -cGGCcGCGcGCGCCgcgGCGUccagcgcgaaGGCCAGCg -3'
miRNA:   3'- acCCGcUGC-UGCGGa--UGCA----------CCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.