miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 31752 0.72 0.434657
Target:  5'- cGGG-GACG-CGCCUGCGgcGGCgGGCg -3'
miRNA:   3'- aCCCgCUGCuGCGGAUGCa-CCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 40565 0.72 0.443565
Target:  5'- aGcGGCGGCGGCgGCCgcgGCGgagGGCuCGGCg -3'
miRNA:   3'- aC-CCGCUGCUG-CGGa--UGCa--CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 36078 0.72 0.443565
Target:  5'- cGGGCggccucuucuccGACGACGCCgcCGaGGCCGAg -3'
miRNA:   3'- aCCCG------------CUGCUGCGGauGCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 120320 0.72 0.452575
Target:  5'- cGGGCagccucucgGACGccgcgcGCGCCcGCGUGGCCGGg -3'
miRNA:   3'- aCCCG---------CUGC------UGCGGaUGCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 15086 0.72 0.452575
Target:  5'- -uGGCGccccgacacGCGGCGCCU-CGgGGCCGACg -3'
miRNA:   3'- acCCGC---------UGCUGCGGAuGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 118205 0.72 0.461684
Target:  5'- cGGGC-ACGugGCCgugGUGGCgGGCg -3'
miRNA:   3'- aCCCGcUGCugCGGaugCACCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 21590 0.72 0.461684
Target:  5'- gGGGuCGAUGGCGUacgGCGUGGCggCGGCg -3'
miRNA:   3'- aCCC-GCUGCUGCGga-UGCACCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 17866 0.72 0.461684
Target:  5'- cGGGCGAUGAUGCCccCGaucaGcGCCGACa -3'
miRNA:   3'- aCCCGCUGCUGCGGauGCa---C-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 56567 0.72 0.461684
Target:  5'- cGGGCGACG-CGCCgccgcccgACG-GGCUggUg -3'
miRNA:   3'- aCCCGCUGCuGCGGa-------UGCaCCGGuuG- -5'
29470 5' -58.6 NC_006151.1 + 17401 0.72 0.461684
Target:  5'- gGGGCG-CGugGCgcGCGgcagcagGGCCAGCg -3'
miRNA:   3'- aCCCGCuGCugCGgaUGCa------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 100226 0.72 0.470888
Target:  5'- cGGGCGcCGugGCCgagcGCGUGGUg--- -3'
miRNA:   3'- aCCCGCuGCugCGGa---UGCACCGguug -5'
29470 5' -58.6 NC_006151.1 + 111203 0.71 0.480185
Target:  5'- -cGGUGACGcACGCCacgGCGUaGCCGGCg -3'
miRNA:   3'- acCCGCUGC-UGCGGa--UGCAcCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 130881 0.71 0.480185
Target:  5'- gUGGGCGGCGGCGgUggagGCGgcGGCCGu- -3'
miRNA:   3'- -ACCCGCUGCUGCgGa---UGCa-CCGGUug -5'
29470 5' -58.6 NC_006151.1 + 122325 0.71 0.48957
Target:  5'- cGGugcGCGugGACcCCgaggACGUGGCCAAg -3'
miRNA:   3'- aCC---CGCugCUGcGGa---UGCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 139983 0.71 0.48957
Target:  5'- cGGGCGGCG-CGUC-ACGUGGgaGACg -3'
miRNA:   3'- aCCCGCUGCuGCGGaUGCACCggUUG- -5'
29470 5' -58.6 NC_006151.1 + 135091 0.71 0.499041
Target:  5'- gGGGCGGCGGgGCCggGCGggcGGCggUAGCg -3'
miRNA:   3'- aCCCGCUGCUgCGGa-UGCa--CCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 86721 0.71 0.499041
Target:  5'- cUGGucGCGGCG-CGCCgccGCGaGGCCGGCg -3'
miRNA:   3'- -ACC--CGCUGCuGCGGa--UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 57519 0.71 0.508591
Target:  5'- gGcGGCGGCGGcCGCCUccgGCGcGGCCGcggGCa -3'
miRNA:   3'- aC-CCGCUGCU-GCGGA---UGCaCCGGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 22183 0.71 0.508591
Target:  5'- cGGGCGcgugugguaGACGUCcGCGgGGCCGACg -3'
miRNA:   3'- aCCCGCug-------CUGCGGaUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 63760 0.71 0.518219
Target:  5'- gGGGCGuccuCGGCGCCcccGCGUcGCCAGg -3'
miRNA:   3'- aCCCGCu---GCUGCGGa--UGCAcCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.