miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 120835 0.66 0.810759
Target:  5'- cGcGCGACGACaCgUGgGUGGCCAcguACa -3'
miRNA:   3'- aCcCGCUGCUGcGgAUgCACCGGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 27352 0.66 0.810759
Target:  5'- gGGGuCGugGGCcgggGCCcggGCG-GGUCGACg -3'
miRNA:   3'- aCCC-GCugCUG----CGGa--UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 40439 0.66 0.810759
Target:  5'- -cGGCGGCGcuugccuccccgGCGCCUGCcuccccggcccgGUGGCCc-- -3'
miRNA:   3'- acCCGCUGC------------UGCGGAUG------------CACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 62552 0.66 0.810759
Target:  5'- gGGGCaACGACGaguaCCUGC-UGGCCc-- -3'
miRNA:   3'- aCCCGcUGCUGC----GGAUGcACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 118154 0.66 0.810759
Target:  5'- cGcGGCGGUGGCGCCgcuggUGCGcGGCCuGACc -3'
miRNA:   3'- aC-CCGCUGCUGCGG-----AUGCaCCGG-UUG- -5'
29470 5' -58.6 NC_006151.1 + 99589 0.66 0.802029
Target:  5'- gGuGGCGGCGgccgaGCGCC-GCGccgGGCUGGCg -3'
miRNA:   3'- aC-CCGCUGC-----UGCGGaUGCa--CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 96068 0.66 0.802029
Target:  5'- -uGGCGAgCGA-GCCgcgcGCGcGGCCGGCg -3'
miRNA:   3'- acCCGCU-GCUgCGGa---UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 75269 0.66 0.793148
Target:  5'- cGGGCuccuGGCGcaGCGCCgccaGCGUGGCg--- -3'
miRNA:   3'- aCCCG----CUGC--UGCGGa---UGCACCGguug -5'
29470 5' -58.6 NC_006151.1 + 78114 0.66 0.793148
Target:  5'- gGGGCG--GACGCCauccUGCGgcgGGCCg-- -3'
miRNA:   3'- aCCCGCugCUGCGG----AUGCa--CCGGuug -5'
29470 5' -58.6 NC_006151.1 + 89143 0.66 0.793148
Target:  5'- gGGGCGuCGAgaccgcgccCGCCUcggGCGaGGCgGGCg -3'
miRNA:   3'- aCCCGCuGCU---------GCGGA---UGCaCCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 98957 0.66 0.793148
Target:  5'- cGGGCcguggacgaGGCGGCGCUggugcccguggGCGaGGUCAACg -3'
miRNA:   3'- aCCCG---------CUGCUGCGGa----------UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 55643 0.66 0.796718
Target:  5'- aGGaGCuGAuccgcugcuucaagcUGACGC--GCGUGGCCAACa -3'
miRNA:   3'- aCC-CG-CU---------------GCUGCGgaUGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 139217 0.66 0.796718
Target:  5'- -uGGCGGCGACGCUgccgcacaucgcgcGCGUcuccGGCgCGACg -3'
miRNA:   3'- acCCGCUGCUGCGGa-------------UGCA----CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 10013 0.66 0.802029
Target:  5'- aGcGGCGGCGGCgGUCgcCGcGGCCAGg -3'
miRNA:   3'- aC-CCGCUGCUG-CGGauGCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 54091 0.66 0.802029
Target:  5'- gGcGGCGGCGGCgGCC-AUGUcGGCUgcGACg -3'
miRNA:   3'- aC-CCGCUGCUG-CGGaUGCA-CCGG--UUG- -5'
29470 5' -58.6 NC_006151.1 + 61767 0.66 0.802029
Target:  5'- cGGGgGcCGugGUgCUGCGgcgcgaGGCCGGCc -3'
miRNA:   3'- aCCCgCuGCugCG-GAUGCa-----CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 67292 0.66 0.802029
Target:  5'- cUGGuGCcGCGACGCgcGCGUGGaCCAc- -3'
miRNA:   3'- -ACC-CGcUGCUGCGgaUGCACC-GGUug -5'
29470 5' -58.6 NC_006151.1 + 101534 0.66 0.802029
Target:  5'- aGGccuucGUGGCG-CGCCUGCGcccGGCgGACg -3'
miRNA:   3'- aCC-----CGCUGCuGCGGAUGCa--CCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 5859 0.66 0.802029
Target:  5'- aGGGgGACGAgCGCC--CGgGGCCGc- -3'
miRNA:   3'- aCCCgCUGCU-GCGGauGCaCCGGUug -5'
29470 5' -58.6 NC_006151.1 + 59295 0.66 0.802029
Target:  5'- cGcGGCGugG-CGCCcGCGgcucagcgGGCCcGCg -3'
miRNA:   3'- aC-CCGCugCuGCGGaUGCa-------CCGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.