miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 100810 0.75 0.321761
Target:  5'- cGGGCGACGGCGag-GCG-GGCCccGACg -3'
miRNA:   3'- aCCCGCUGCUGCggaUGCaCCGG--UUG- -5'
29470 5' -58.6 NC_006151.1 + 75531 0.75 0.321761
Target:  5'- cGGGU-ACGGCaCCUGCGUGGCCugguACa -3'
miRNA:   3'- aCCCGcUGCUGcGGAUGCACCGGu---UG- -5'
29470 5' -58.6 NC_006151.1 + 104566 0.74 0.33647
Target:  5'- cUGGGCGcGCGGCGCgCggACGUgcugcaGGCCGGCg -3'
miRNA:   3'- -ACCCGC-UGCUGCG-Ga-UGCA------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 2299 0.74 0.33647
Target:  5'- gGcGGCGACGGCGCC--CGgGGUCAGCa -3'
miRNA:   3'- aC-CCGCUGCUGCGGauGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 102856 0.74 0.344006
Target:  5'- -cGGCG-CGcaGCGCUUccGCGUGGCCAACg -3'
miRNA:   3'- acCCGCuGC--UGCGGA--UGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 53969 0.74 0.351662
Target:  5'- aGcGGCGGCGGCGCCUccgcggGCGUcgcGGCgAGCu -3'
miRNA:   3'- aC-CCGCUGCUGCGGA------UGCA---CCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 64217 0.74 0.359439
Target:  5'- -cGGCGugGGCGCCUcgGCGUacagGGCCGcgACg -3'
miRNA:   3'- acCCGCugCUGCGGA--UGCA----CCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 132150 0.74 0.367336
Target:  5'- gUGGuuGACGGCGCgcagCUGCGcGGCCGGCa -3'
miRNA:   3'- -ACCcgCUGCUGCG----GAUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 119250 0.74 0.367336
Target:  5'- -aGGUGGCGGCGcCCUACcUGGCCGGg -3'
miRNA:   3'- acCCGCUGCUGC-GGAUGcACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 45631 0.74 0.370527
Target:  5'- gGGGCGugGACGCCccggGCGaagacaaacaaaggGGCCGGg -3'
miRNA:   3'- aCCCGCugCUGCGGa---UGCa-------------CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 78142 0.73 0.37535
Target:  5'- cGGGCgccucgGACGACGCCUcggccgcCGUGGUCGAg -3'
miRNA:   3'- aCCCG------CUGCUGCGGAu------GCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 122924 0.73 0.383482
Target:  5'- aGGGCGGCGACGac-GCGgacGCCGACg -3'
miRNA:   3'- aCCCGCUGCUGCggaUGCac-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 55473 0.73 0.383482
Target:  5'- gGGGCGcgcgccCGGCGCC-GCGgacGGCCAGCc -3'
miRNA:   3'- aCCCGCu-----GCUGCGGaUGCa--CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 49831 0.73 0.400094
Target:  5'- aGGGaCGACGACGgCgGCGgcgGGCCcGCg -3'
miRNA:   3'- aCCC-GCUGCUGCgGaUGCa--CCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 57980 0.73 0.407717
Target:  5'- gUGGGCGGCGAgcgcgccgcggacCGCCUccgGCGcGGCCGc- -3'
miRNA:   3'- -ACCCGCUGCU-------------GCGGA---UGCaCCGGUug -5'
29470 5' -58.6 NC_006151.1 + 70930 0.73 0.40857
Target:  5'- cUGGcGCugcacGACGGCGCCUucucggcggugcGCGUGGCCGu- -3'
miRNA:   3'- -ACC-CG-----CUGCUGCGGA------------UGCACCGGUug -5'
29470 5' -58.6 NC_006151.1 + 121087 0.73 0.417157
Target:  5'- cGGGCGGCGGCGCCg----GGCUGcACg -3'
miRNA:   3'- aCCCGCUGCUGCGGaugcaCCGGU-UG- -5'
29470 5' -58.6 NC_006151.1 + 107452 0.72 0.425854
Target:  5'- cUGGaccugcuCGGCGACGaCCUG-GUGGCCAGCg -3'
miRNA:   3'- -ACCc------GCUGCUGC-GGAUgCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 137484 0.72 0.425854
Target:  5'- cUGGGaCGACGACGCCgcccucGCCGACu -3'
miRNA:   3'- -ACCC-GCUGCUGCGGaugcacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 133156 0.72 0.425854
Target:  5'- -cGGCGGCGGCGCggGCGUgGGCCu-- -3'
miRNA:   3'- acCCGCUGCUGCGgaUGCA-CCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.