miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 15893 0.7 0.537683
Target:  5'- cGGGgGACGcGCGCCccgACGcGGCCcGCc -3'
miRNA:   3'- aCCCgCUGC-UGCGGa--UGCaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 17401 0.72 0.461684
Target:  5'- gGGGCG-CGugGCgcGCGgcagcagGGCCAGCg -3'
miRNA:   3'- aCCCGCuGCugCGgaUGCa------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 17866 0.72 0.461684
Target:  5'- cGGGCGAUGAUGCCccCGaucaGcGCCGACa -3'
miRNA:   3'- aCCCGCUGCUGCGGauGCa---C-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 18050 0.67 0.717733
Target:  5'- gGGGCGcaGCGGgGagcggggucCCUugGgGGCCAGCa -3'
miRNA:   3'- aCCCGC--UGCUgC---------GGAugCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 18159 0.67 0.707892
Target:  5'- gGGGCGGCGGCggGCaugucggaaUGCGggcgGGCCGGu -3'
miRNA:   3'- aCCCGCUGCUG--CGg--------AUGCa---CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 18692 0.68 0.697989
Target:  5'- cGGGCGcgcggGCGGCGCCggcguCGUGacGCCGu- -3'
miRNA:   3'- aCCCGC-----UGCUGCGGau---GCAC--CGGUug -5'
29470 5' -58.6 NC_006151.1 + 18851 0.67 0.756295
Target:  5'- gGuGGCGACGugGCCguUGUgGGUCAucACg -3'
miRNA:   3'- aC-CCGCUGCugCGGauGCA-CCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 19275 0.67 0.746793
Target:  5'- cGuGGCGcGCGGgGCCcACcggGGCCAGCg -3'
miRNA:   3'- aC-CCGC-UGCUgCGGaUGca-CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 20132 0.67 0.707892
Target:  5'- cUGGGgGGCgGGCGCC-GCGgGGgCGGCg -3'
miRNA:   3'- -ACCCgCUG-CUGCGGaUGCaCCgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 20990 0.69 0.637734
Target:  5'- cGGGCacgagGACGGCGCUgccggcgACGUGcacgcugacGCCGGCg -3'
miRNA:   3'- aCCCG-----CUGCUGCGGa------UGCAC---------CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 21410 0.68 0.647834
Target:  5'- gGGGCGguGCGGCGUCU-CG-GGCCu-- -3'
miRNA:   3'- aCCCGC--UGCUGCGGAuGCaCCGGuug -5'
29470 5' -58.6 NC_006151.1 + 21460 0.7 0.527918
Target:  5'- -cGGCGGCGugGuCCcGCGUcGCCGGCu -3'
miRNA:   3'- acCCGCUGCugC-GGaUGCAcCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 21590 0.72 0.461684
Target:  5'- gGGGuCGAUGGCGUacgGCGUGGCggCGGCg -3'
miRNA:   3'- aCCC-GCUGCUGCGga-UGCACCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 22183 0.71 0.508591
Target:  5'- cGGGCGcgugugguaGACGUCcGCGgGGCCGACg -3'
miRNA:   3'- aCCCGCug-------CUGCGGaUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 25124 0.67 0.746793
Target:  5'- cUGGGCGugGACGCgcgacaaccccCUGC-UGaGcCCGGCa -3'
miRNA:   3'- -ACCCGCugCUGCG-----------GAUGcAC-C-GGUUG- -5'
29470 5' -58.6 NC_006151.1 + 26332 0.66 0.765691
Target:  5'- gGGGCGAgGccCGCCUcACG-GGgCGGCg -3'
miRNA:   3'- aCCCGCUgCu-GCGGA-UGCaCCgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 27352 0.66 0.810759
Target:  5'- gGGGuCGugGGCcgggGCCcggGCG-GGUCGACg -3'
miRNA:   3'- aCCC-GCugCUG----CGGa--UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 28179 0.69 0.587319
Target:  5'- gGGGCGGCGAgUGCCguCGgccgGGCCGccACg -3'
miRNA:   3'- aCCCGCUGCU-GCGGauGCa---CCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 31617 0.67 0.717733
Target:  5'- cUGGGCGGgGAUGCC-GCGccGGCaCGAg -3'
miRNA:   3'- -ACCCGCUgCUGCGGaUGCa-CCG-GUUg -5'
29470 5' -58.6 NC_006151.1 + 31752 0.72 0.434657
Target:  5'- cGGG-GACG-CGCCUGCGgcGGCgGGCg -3'
miRNA:   3'- aCCCgCUGCuGCGGAUGCa-CCGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.