miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 129400 0.66 0.774971
Target:  5'- cUGGGUGGCG-CGCg-GCGUauucggcgaGGUCGACg -3'
miRNA:   3'- -ACCCGCUGCuGCGgaUGCA---------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 128803 0.67 0.756295
Target:  5'- -cGGCGagcGCGGCGC--GCGUGGCCccguACg -3'
miRNA:   3'- acCCGC---UGCUGCGgaUGCACCGGu---UG- -5'
29470 5' -58.6 NC_006151.1 + 128582 0.68 0.657921
Target:  5'- cGGGCGACauCGUCUcGCGcGGCCcGCg -3'
miRNA:   3'- aCCCGCUGcuGCGGA-UGCaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 128020 0.76 0.280547
Target:  5'- gGcGGCGACGGCGUCUGCGacGCCcGCg -3'
miRNA:   3'- aC-CCGCUGCUGCGGAUGCacCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 127541 0.66 0.793148
Target:  5'- gGGGCccaGGgGGCGUCgucguCGUGGCCGc- -3'
miRNA:   3'- aCCCG---CUgCUGCGGau---GCACCGGUug -5'
29470 5' -58.6 NC_006151.1 + 127333 0.67 0.746793
Target:  5'- cGGGCGGgGGUGCUgguacACGUGGUCGGu -3'
miRNA:   3'- aCCCGCUgCUGCGGa----UGCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 124999 0.69 0.637734
Target:  5'- cUGGGCGACuGCGuCCUccGCGaGGCCu-- -3'
miRNA:   3'- -ACCCGCUGcUGC-GGA--UGCaCCGGuug -5'
29470 5' -58.6 NC_006151.1 + 123119 0.67 0.756295
Target:  5'- -cGGCGGCGA-GCCUggcgcaguGCGUGcGCgAGCa -3'
miRNA:   3'- acCCGCUGCUgCGGA--------UGCAC-CGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 122963 0.66 0.784126
Target:  5'- gGGGCG-CgGACGCCggcgACGggGGCguCGGCg -3'
miRNA:   3'- aCCCGCuG-CUGCGGa---UGCa-CCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 122924 0.73 0.383482
Target:  5'- aGGGCGGCGACGac-GCGgacGCCGACg -3'
miRNA:   3'- aCCCGCUGCUGCggaUGCac-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 122775 0.67 0.707892
Target:  5'- cGGGCugcucGugGGCGgCUGCGcGGCCu-- -3'
miRNA:   3'- aCCCG-----CugCUGCgGAUGCaCCGGuug -5'
29470 5' -58.6 NC_006151.1 + 122472 0.68 0.688031
Target:  5'- cGGGCGcCGAgGCCggggACGcgGGCgaGACg -3'
miRNA:   3'- aCCCGCuGCUgCGGa---UGCa-CCGg-UUG- -5'
29470 5' -58.6 NC_006151.1 + 122325 0.71 0.48957
Target:  5'- cGGugcGCGugGACcCCgaggACGUGGCCAAg -3'
miRNA:   3'- aCC---CGCugCUGcGGa---UGCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 121957 0.7 0.567326
Target:  5'- -cGGCGACGACGCCga---GGCCuACu -3'
miRNA:   3'- acCCGCUGCUGCGGaugcaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 121863 0.67 0.737193
Target:  5'- aGGcGCaGACGACGCCgcucACGUGcGCgCuGCg -3'
miRNA:   3'- aCC-CG-CUGCUGCGGa---UGCAC-CG-GuUG- -5'
29470 5' -58.6 NC_006151.1 + 121661 0.66 0.802029
Target:  5'- cGGGCgGGCGGagggggggaGCgaGCG-GGCCGACc -3'
miRNA:   3'- aCCCG-CUGCUg--------CGgaUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 121417 0.7 0.557392
Target:  5'- cGGGCGGgGACGUC-GCGgGGCUcGCg -3'
miRNA:   3'- aCCCGCUgCUGCGGaUGCaCCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 121264 0.66 0.810759
Target:  5'- -uGGCGGCcGCGCUggcggagaUcaacgggcGCGUGGCCGACc -3'
miRNA:   3'- acCCGCUGcUGCGG--------A--------UGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 121087 0.73 0.417157
Target:  5'- cGGGCGGCGGCGCCg----GGCUGcACg -3'
miRNA:   3'- aCCCGCUGCUGCGGaugcaCCGGU-UG- -5'
29470 5' -58.6 NC_006151.1 + 120835 0.66 0.810759
Target:  5'- cGcGCGACGACaCgUGgGUGGCCAcguACa -3'
miRNA:   3'- aCcCGCUGCUGcGgAUgCACCGGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.