miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 141500 0.7 0.54751
Target:  5'- cGcGGCGACgGGCGUCUccACGggGGCCGAg -3'
miRNA:   3'- aC-CCGCUG-CUGCGGA--UGCa-CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 139983 0.71 0.48957
Target:  5'- cGGGCGGCG-CGUC-ACGUGGgaGACg -3'
miRNA:   3'- aCCCGCUGCuGCGGaUGCACCggUUG- -5'
29470 5' -58.6 NC_006151.1 + 139217 0.66 0.796718
Target:  5'- -uGGCGGCGACGCUgccgcacaucgcgcGCGUcuccGGCgCGACg -3'
miRNA:   3'- acCCGCUGCUGCGGa-------------UGCA----CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 138530 0.69 0.637734
Target:  5'- gGGGUGAUgGGCGCgUACGccGGCCugGGCg -3'
miRNA:   3'- aCCCGCUG-CUGCGgAUGCa-CCGG--UUG- -5'
29470 5' -58.6 NC_006151.1 + 138156 0.71 0.518219
Target:  5'- cGGcGCGcgcuCGAgGCCUuCGUGGCgGACg -3'
miRNA:   3'- aCC-CGCu---GCUgCGGAuGCACCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 137484 0.72 0.425854
Target:  5'- cUGGGaCGACGACGCCgcccucGCCGACu -3'
miRNA:   3'- -ACCC-GCUGCUGCGGaugcacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 137140 0.67 0.746793
Target:  5'- cGGcGCGACGcgGCGCCggaGaUGGCCGcGCa -3'
miRNA:   3'- aCC-CGCUGC--UGCGGaugC-ACCGGU-UG- -5'
29470 5' -58.6 NC_006151.1 + 136940 0.69 0.604414
Target:  5'- cGGGCgccGACGGCGCCguccUGCGccgccugcuggagcUGGCCGccGCg -3'
miRNA:   3'- aCCCG---CUGCUGCGG----AUGC--------------ACCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 135844 0.69 0.587319
Target:  5'- -cGGCGucACGuucUGCCUcaccgggcACGUGGCCAGCg -3'
miRNA:   3'- acCCGC--UGCu--GCGGA--------UGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 135489 0.66 0.774971
Target:  5'- cGGGCcaGGCGGCGC--GCGgccucGGCCGAg -3'
miRNA:   3'- aCCCG--CUGCUGCGgaUGCa----CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 135178 0.68 0.647834
Target:  5'- cGGGCGcCGGCuGCCgcCGccgGGCCAGu -3'
miRNA:   3'- aCCCGCuGCUG-CGGauGCa--CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 135091 0.71 0.499041
Target:  5'- gGGGCGGCGGgGCCggGCGggcGGCggUAGCg -3'
miRNA:   3'- aCCCGCUGCUgCGGa-UGCa--CCG--GUUG- -5'
29470 5' -58.6 NC_006151.1 + 133389 0.69 0.597366
Target:  5'- gGGGCGGCGGCcgggGCCgagcggGCGgucuUGGCCGcggACg -3'
miRNA:   3'- aCCCGCUGCUG----CGGa-----UGC----ACCGGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 133156 0.72 0.425854
Target:  5'- -cGGCGGCGGCGCggGCGUgGGCCu-- -3'
miRNA:   3'- acCCGCUGCUGCGgaUGCA-CCGGuug -5'
29470 5' -58.6 NC_006151.1 + 132150 0.74 0.367336
Target:  5'- gUGGuuGACGGCGCgcagCUGCGcGGCCGGCa -3'
miRNA:   3'- -ACCcgCUGCUGCG----GAUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 130943 0.68 0.696995
Target:  5'- gGGGCGGCGgggggucGCGCggGCGcgggGGCCggUa -3'
miRNA:   3'- aCCCGCUGC-------UGCGgaUGCa---CCGGuuG- -5'
29470 5' -58.6 NC_006151.1 + 130881 0.71 0.480185
Target:  5'- gUGGGCGGCGGCGgUggagGCGgcGGCCGu- -3'
miRNA:   3'- -ACCCGCUGCUGCgGa---UGCa-CCGGUug -5'
29470 5' -58.6 NC_006151.1 + 130714 0.68 0.657921
Target:  5'- gGGGCGGCccgGGgGCCcGCGcGGCCGcgGCg -3'
miRNA:   3'- aCCCGCUG---CUgCGGaUGCaCCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 130368 0.66 0.765691
Target:  5'- -cGGCcGCGcGCGCCgcgGCGUccagcgcgaaGGCCAGCg -3'
miRNA:   3'- acCCGcUGC-UGCGGa--UGCA----------CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 129771 0.69 0.597366
Target:  5'- -aGGCGACGAgggcgucgcuccCGCCgGCGUgGGCCcGCa -3'
miRNA:   3'- acCCGCUGCU------------GCGGaUGCA-CCGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.