miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 55549 1.1 0.001317
Target:  5'- aUGGGCGACGACGCCUACGUGGCCAACa -3'
miRNA:   3'- -ACCCGCUGCUGCGGAUGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 96116 0.92 0.024594
Target:  5'- cGGGC-ACGAuCGCCUGCGUGGCCAGCg -3'
miRNA:   3'- aCCCGcUGCU-GCGGAUGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 119450 0.82 0.112346
Target:  5'- gUGGGCcgcGGCGACGUggacgccgugcgCUACGUGGCCGGCa -3'
miRNA:   3'- -ACCCG---CUGCUGCG------------GAUGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 43383 0.81 0.124546
Target:  5'- gGGGCgGugGugGCCgucgcuCGUGGCCGGCa -3'
miRNA:   3'- aCCCG-CugCugCGGau----GCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 72256 0.81 0.131097
Target:  5'- cGGcCGcCGACGCCgagcgGCGUGGCCAGCa -3'
miRNA:   3'- aCCcGCuGCUGCGGa----UGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 97995 0.79 0.168849
Target:  5'- cGGGCGGCGugGCCgcguagGCGgcgccGGCCAGg -3'
miRNA:   3'- aCCCGCUGCugCGGa-----UGCa----CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 64548 0.77 0.221341
Target:  5'- gGGGCGGCGAgGCCgugGCGc-GCCAGCu -3'
miRNA:   3'- aCCCGCUGCUgCGGa--UGCacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 89268 0.76 0.255472
Target:  5'- gUGGuCGACGGCGCCgcgGCGaUGGCCGccGCg -3'
miRNA:   3'- -ACCcGCUGCUGCGGa--UGC-ACCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 81624 0.76 0.255472
Target:  5'- aGGGCGACGgcgaagaagaGCGCCUGC-UGGUCGAa -3'
miRNA:   3'- aCCCGCUGC----------UGCGGAUGcACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 113021 0.76 0.255472
Target:  5'- cGGGCGACGACGCgUGCGccgGGUgcugcgCGGCg -3'
miRNA:   3'- aCCCGCUGCUGCGgAUGCa--CCG------GUUG- -5'
29470 5' -58.6 NC_006151.1 + 128020 0.76 0.280547
Target:  5'- gGcGGCGACGGCGUCUGCGacGCCcGCg -3'
miRNA:   3'- aC-CCGCUGCUGCGGAUGCacCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 102362 0.75 0.287114
Target:  5'- -cGGCGACGACGCgUccgcgccCGUGGCCAAg -3'
miRNA:   3'- acCCGCUGCUGCGgAu------GCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 65826 0.75 0.287114
Target:  5'- aUGGGCGGCcGCGCCaGCGcGGcCCGGCu -3'
miRNA:   3'- -ACCCGCUGcUGCGGaUGCaCC-GGUUG- -5'
29470 5' -58.6 NC_006151.1 + 63482 0.75 0.293801
Target:  5'- gGcGGCGGCGGCGCCcgaagaAgGUGGCCAGg -3'
miRNA:   3'- aC-CCGCUGCUGCGGa-----UgCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 120767 0.75 0.293801
Target:  5'- cUGGGUG-CGGCGCCcgcugGCGgacgcGGCCGACg -3'
miRNA:   3'- -ACCCGCuGCUGCGGa----UGCa----CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 115125 0.75 0.300609
Target:  5'- -cGGCGACGcGCGCgUGCGccucGGCCAGCa -3'
miRNA:   3'- acCCGCUGC-UGCGgAUGCa---CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 48405 0.75 0.300609
Target:  5'- gUGGGCGuCGGgcacCGCCUACcUGGUCAACc -3'
miRNA:   3'- -ACCCGCuGCU----GCGGAUGcACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 54439 0.75 0.300609
Target:  5'- -cGGCGACGagGCGCCcgcCGUGGCCGAg -3'
miRNA:   3'- acCCGCUGC--UGCGGau-GCACCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 73326 0.75 0.314588
Target:  5'- aUGGGCGG-GGCGCCgcGCGUGGCgAAg -3'
miRNA:   3'- -ACCCGCUgCUGCGGa-UGCACCGgUUg -5'
29470 5' -58.6 NC_006151.1 + 82691 0.75 0.314588
Target:  5'- aGGGCGGCGGCcCCcGCGagGGCCAGg -3'
miRNA:   3'- aCCCGCUGCUGcGGaUGCa-CCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.