miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 11078 0.69 0.626351
Target:  5'- gUGCGGCGGAccgugCCaAGUUUaggGCGCUGCg- -3'
miRNA:   3'- -ACGCCGUCUa----GG-UCAGG---UGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 49110 0.69 0.616094
Target:  5'- cGCGGCGG-UCCGGgcgacguacCCgACGCUGCcCg -3'
miRNA:   3'- aCGCCGUCuAGGUCa--------GG-UGCGACGaG- -5'
29471 5' -58.2 NC_006151.1 + 104608 0.69 0.616094
Target:  5'- cGCGGCgccgAGAUCUg--CCGCGC-GCUCg -3'
miRNA:   3'- aCGCCG----UCUAGGucaGGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 4048 0.69 0.605849
Target:  5'- cGCGggcGCGGGcCCcGUCCACGCUGUa- -3'
miRNA:   3'- aCGC---CGUCUaGGuCAGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 20207 0.69 0.605849
Target:  5'- cGCGcGCAGcgCCGGgCCGCGCagGCg- -3'
miRNA:   3'- aCGC-CGUCuaGGUCaGGUGCGa-CGag -5'
29471 5' -58.2 NC_006151.1 + 4565 0.69 0.605849
Target:  5'- gUGCGGCAGcggCgGGgUCACGCUGC-Cg -3'
miRNA:   3'- -ACGCCGUCua-GgUCaGGUGCGACGaG- -5'
29471 5' -58.2 NC_006151.1 + 59148 0.69 0.595623
Target:  5'- cGCgGGCGGGUCCAGgccggcgUCGCGCaGCa- -3'
miRNA:   3'- aCG-CCGUCUAGGUCa------GGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 70110 0.69 0.57526
Target:  5'- cGCGaGCGGGUCCAcGcCCGCGCgccGCa- -3'
miRNA:   3'- aCGC-CGUCUAGGU-CaGGUGCGa--CGag -5'
29471 5' -58.2 NC_006151.1 + 78069 0.7 0.555059
Target:  5'- cGCGGCGGGagCCuGUCCcUGCagaUGCUCu -3'
miRNA:   3'- aCGCCGUCUa-GGuCAGGuGCG---ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 139563 0.7 0.555059
Target:  5'- aGCGGCGc--CCGGUCCGCGagcgccuggGCUCg -3'
miRNA:   3'- aCGCCGUcuaGGUCAGGUGCga-------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 2609 0.7 0.545036
Target:  5'- gGCGGCAGcgggaccgggGUCCGGggCCcgGCGCgggUGCUCa -3'
miRNA:   3'- aCGCCGUC----------UAGGUCa-GG--UGCG---ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 113607 0.7 0.535072
Target:  5'- cGUGGCcGAgcgCCAGgcggacCCGCGCgUGCUCu -3'
miRNA:   3'- aCGCCGuCUa--GGUCa-----GGUGCG-ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 94290 0.7 0.534079
Target:  5'- aGCGGCAGGUCCgucucgagccagcGGUuggCCACGCUcaGCg- -3'
miRNA:   3'- aCGCCGUCUAGG-------------UCA---GGUGCGA--CGag -5'
29471 5' -58.2 NC_006151.1 + 62177 0.7 0.525172
Target:  5'- aGaCGGCGGAggccgcccuggCCGuGUUCACGCUGCUg -3'
miRNA:   3'- aC-GCCGUCUa----------GGU-CAGGUGCGACGAg -5'
29471 5' -58.2 NC_006151.1 + 33925 0.7 0.525172
Target:  5'- gGCgGGCGGAUCgAGgcCCGCGCgccccggggGCUCg -3'
miRNA:   3'- aCG-CCGUCUAGgUCa-GGUGCGa--------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 105613 0.7 0.525172
Target:  5'- cGCGGUGGAUCCcgcccaAGUacgccgccuaCCGCgaGCUGCUCa -3'
miRNA:   3'- aCGCCGUCUAGG------UCA----------GGUG--CGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 132124 0.7 0.515343
Target:  5'- aGCGGCAGGcCCAGcUCGCGCcgGCg- -3'
miRNA:   3'- aCGCCGUCUaGGUCaGGUGCGa-CGag -5'
29471 5' -58.2 NC_006151.1 + 78194 0.7 0.514364
Target:  5'- cGCGGCGGAcCCcuucuucgggacgGGcUCCACGUcGCUCa -3'
miRNA:   3'- aCGCCGUCUaGG-------------UC-AGGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 39161 0.71 0.458107
Target:  5'- cGCGGCGG--CCucUCgGCGCUGCUCg -3'
miRNA:   3'- aCGCCGUCuaGGucAGgUGCGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 50091 0.72 0.446153
Target:  5'- cGCGGCgcgcguacgcgaucAGcUCCGGUCCGCGgUGCg- -3'
miRNA:   3'- aCGCCG--------------UCuAGGUCAGGUGCgACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.