miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 50091 0.72 0.446153
Target:  5'- cGCGGCgcgcguacgcgaucAGcUCCGGUCCGCGgUGCg- -3'
miRNA:   3'- aCGCCG--------------UCuAGGUCAGGUGCgACGag -5'
29471 5' -58.2 NC_006151.1 + 51967 0.68 0.645846
Target:  5'- cGCGGCGuGUCCAGcgaggcgagcagcUCCGCGgUGC-Cg -3'
miRNA:   3'- aCGCCGUcUAGGUC-------------AGGUGCgACGaG- -5'
29471 5' -58.2 NC_006151.1 + 52395 0.65 0.8007
Target:  5'- gGCGGCGGGcgCCg--CCGCGCccgagaagucaaagUGCUCc -3'
miRNA:   3'- aCGCCGUCUa-GGucaGGUGCG--------------ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 53266 0.67 0.747371
Target:  5'- cGCGGCA----CAGcugCCGCGCgUGCUCg -3'
miRNA:   3'- aCGCCGUcuagGUCa--GGUGCG-ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 54311 1.1 0.001217
Target:  5'- gUGCGGCAGAUCCAGUCCACGCUGCUCa -3'
miRNA:   3'- -ACGCCGUCUAGGUCAGGUGCGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 56295 0.67 0.737626
Target:  5'- cGCGGCGGAggCGGacgCCGCGCggUGCc- -3'
miRNA:   3'- aCGCCGUCUagGUCa--GGUGCG--ACGag -5'
29471 5' -58.2 NC_006151.1 + 57447 0.66 0.781544
Target:  5'- cGCGGCGGcccccgcgucggCCAGgugCCGCGCcGCg- -3'
miRNA:   3'- aCGCCGUCua----------GGUCa--GGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 58165 0.8 0.144593
Target:  5'- gGCGGUAGAgcgccaCCAGcgCCGCGUUGCUCa -3'
miRNA:   3'- aCGCCGUCUa-----GGUCa-GGUGCGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 58607 0.66 0.757014
Target:  5'- cGUGGcCGGGUCC-GUCUcgaaGCGCagcgGCUCg -3'
miRNA:   3'- aCGCC-GUCUAGGuCAGG----UGCGa---CGAG- -5'
29471 5' -58.2 NC_006151.1 + 59148 0.69 0.595623
Target:  5'- cGCgGGCGGGUCCAGgccggcgUCGCGCaGCa- -3'
miRNA:   3'- aCG-CCGUCUAGGUCa------GGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 60638 0.66 0.775958
Target:  5'- cGgGGCGGGgcucCCGGcCCGCGCcGCg- -3'
miRNA:   3'- aCgCCGUCUa---GGUCaGGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 62177 0.7 0.525172
Target:  5'- aGaCGGCGGAggccgcccuggCCGuGUUCACGCUGCUg -3'
miRNA:   3'- aC-GCCGUCUa----------GGU-CAGGUGCGACGAg -5'
29471 5' -58.2 NC_006151.1 + 64246 0.66 0.766546
Target:  5'- cGaCGGCGGcgCgGG-CCACGCU-CUCg -3'
miRNA:   3'- aC-GCCGUCuaGgUCaGGUGCGAcGAG- -5'
29471 5' -58.2 NC_006151.1 + 64727 0.66 0.766546
Target:  5'- cGCcGCAGAaCCGGgCCACGa-GCUCg -3'
miRNA:   3'- aCGcCGUCUaGGUCaGGUGCgaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 64941 0.66 0.766546
Target:  5'- cGCGuCAGcgCCuGgCCGCGCUGCg- -3'
miRNA:   3'- aCGCcGUCuaGGuCaGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 65188 0.67 0.747371
Target:  5'- aGC-GCGGGUCCGcGagCGCGCUGCg- -3'
miRNA:   3'- aCGcCGUCUAGGU-CagGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 67985 0.67 0.707874
Target:  5'- cGCGGCGGcccgCCGGcgCCGCgGCcacggGCUCg -3'
miRNA:   3'- aCGCCGUCua--GGUCa-GGUG-CGa----CGAG- -5'
29471 5' -58.2 NC_006151.1 + 68019 0.66 0.775958
Target:  5'- gGCGGCguccAGGUCCAGgcggCCcgccgGCGCggcgggcacggGCUCg -3'
miRNA:   3'- aCGCCG----UCUAGGUCa---GG-----UGCGa----------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 69991 0.67 0.727788
Target:  5'- gGCGGCAGcgUCAG--CACGCU-CUCg -3'
miRNA:   3'- aCGCCGUCuaGGUCagGUGCGAcGAG- -5'
29471 5' -58.2 NC_006151.1 + 70110 0.69 0.57526
Target:  5'- cGCGaGCGGGUCCAcGcCCGCGCgccGCa- -3'
miRNA:   3'- aCGC-CGUCUAGGU-CaGGUGCGa--CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.