miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 2386 0.68 0.667344
Target:  5'- gGcCGGCAGGcccUCgGGgCCGCGgaGCUCg -3'
miRNA:   3'- aC-GCCGUCU---AGgUCaGGUGCgaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 2609 0.7 0.545036
Target:  5'- gGCGGCAGcgggaccgggGUCCGGggCCcgGCGCgggUGCUCa -3'
miRNA:   3'- aCGCCGUC----------UAGGUCa-GG--UGCG---ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 3437 0.66 0.775958
Target:  5'- cGCGGCGGAagCCGccGUCgGgCGCggggUGCUCg -3'
miRNA:   3'- aCGCCGUCUa-GGU--CAGgU-GCG----ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 4048 0.69 0.605849
Target:  5'- cGCGggcGCGGGcCCcGUCCACGCUGUa- -3'
miRNA:   3'- aCGC---CGUCUaGGuCAGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 4282 0.68 0.657117
Target:  5'- cGCGGCAGG-CCAggacgcaggcGUCCGC-CaGCUCg -3'
miRNA:   3'- aCGCCGUCUaGGU----------CAGGUGcGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 4565 0.69 0.605849
Target:  5'- gUGCGGCAGcggCgGGgUCACGCUGC-Cg -3'
miRNA:   3'- -ACGCCGUCua-GgUCaGGUGCGACGaG- -5'
29471 5' -58.2 NC_006151.1 + 4632 0.66 0.785241
Target:  5'- cGCuGGCAGAaCUGGUUgaaGCGCUGgUCg -3'
miRNA:   3'- aCG-CCGUCUaGGUCAGg--UGCGACgAG- -5'
29471 5' -58.2 NC_006151.1 + 11078 0.69 0.626351
Target:  5'- gUGCGGCGGAccgugCCaAGUUUaggGCGCUGCg- -3'
miRNA:   3'- -ACGCCGUCUa----GG-UCAGG---UGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 13112 0.67 0.717868
Target:  5'- cGCGGCGGGUCa----CGCGC-GCUCc -3'
miRNA:   3'- aCGCCGUCUAGgucagGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 20207 0.69 0.605849
Target:  5'- cGCGcGCAGcgCCGGgCCGCGCagGCg- -3'
miRNA:   3'- aCGC-CGUCuaGGUCaGGUGCGa-CGag -5'
29471 5' -58.2 NC_006151.1 + 21335 0.66 0.785241
Target:  5'- cGCGGCGGG---GGUCCGCgGCUggaacgGCUCc -3'
miRNA:   3'- aCGCCGUCUaggUCAGGUG-CGA------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 24738 0.66 0.766546
Target:  5'- gUGCGGCAGGaCCAGg-CACGUcGC-Cg -3'
miRNA:   3'- -ACGCCGUCUaGGUCagGUGCGaCGaG- -5'
29471 5' -58.2 NC_006151.1 + 33925 0.7 0.525172
Target:  5'- gGCgGGCGGAUCgAGgcCCGCGCgccccggggGCUCg -3'
miRNA:   3'- aCG-CCGUCUAGgUCa-GGUGCGa--------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 36376 0.67 0.741535
Target:  5'- aGCGGCAGAggCCGGggcccccggcggccCCGgGC-GCUCg -3'
miRNA:   3'- aCGCCGUCUa-GGUCa-------------GGUgCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 37572 0.69 0.626351
Target:  5'- cGcCGGCgAGG-CCAuGUCCugGCUGCa- -3'
miRNA:   3'- aC-GCCG-UCUaGGU-CAGGugCGACGag -5'
29471 5' -58.2 NC_006151.1 + 39041 0.66 0.775958
Target:  5'- aUGCGGCAGAUagCCGaccccgaggacGUgCGCGUgguggUGCUCu -3'
miRNA:   3'- -ACGCCGUCUA--GGU-----------CAgGUGCG-----ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 39161 0.71 0.458107
Target:  5'- cGCGGCGG--CCucUCgGCGCUGCUCg -3'
miRNA:   3'- aCGCCGUCuaGGucAGgUGCGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 40141 0.66 0.757014
Target:  5'- cGCGGCGGcgacggCCGGcCC-CGCggcccGCUCg -3'
miRNA:   3'- aCGCCGUCua----GGUCaGGuGCGa----CGAG- -5'
29471 5' -58.2 NC_006151.1 + 49110 0.69 0.616094
Target:  5'- cGCGGCGG-UCCGGgcgacguacCCgACGCUGCcCg -3'
miRNA:   3'- aCGCCGUCuAGGUCa--------GG-UGCGACGaG- -5'
29471 5' -58.2 NC_006151.1 + 49213 0.68 0.646871
Target:  5'- gUGCGGCgcgGGGUCCccGGcucCCACGCcccGCUCg -3'
miRNA:   3'- -ACGCCG---UCUAGG--UCa--GGUGCGa--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.