Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29471 | 5' | -58.2 | NC_006151.1 | + | 54311 | 1.1 | 0.001217 |
Target: 5'- gUGCGGCAGAUCCAGUCCACGCUGCUCa -3' miRNA: 3'- -ACGCCGUCUAGGUCAGGUGCGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 58165 | 0.8 | 0.144593 |
Target: 5'- gGCGGUAGAgcgccaCCAGcgCCGCGUUGCUCa -3' miRNA: 3'- aCGCCGUCUa-----GGUCa-GGUGCGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 97149 | 0.75 | 0.288983 |
Target: 5'- aGCGGCAGGUCCAccgagCCGCaGC-GCUCg -3' miRNA: 3'- aCGCCGUCUAGGUca---GGUG-CGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 74895 | 0.74 | 0.33182 |
Target: 5'- cGgGGCcagccGAUgCCGGUCCACGCUgaGCUCg -3' miRNA: 3'- aCgCCGu----CUA-GGUCAGGUGCGA--CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 93612 | 0.73 | 0.37095 |
Target: 5'- cUGCaGCAG--CCGGUCCGCGCUGUa- -3' miRNA: 3'- -ACGcCGUCuaGGUCAGGUGCGACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 50091 | 0.72 | 0.446153 |
Target: 5'- cGCGGCgcgcguacgcgaucAGcUCCGGUCCGCGgUGCg- -3' miRNA: 3'- aCGCCG--------------UCuAGGUCAGGUGCgACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 39161 | 0.71 | 0.458107 |
Target: 5'- cGCGGCGG--CCucUCgGCGCUGCUCg -3' miRNA: 3'- aCGCCGUCuaGGucAGgUGCGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 78194 | 0.7 | 0.514364 |
Target: 5'- cGCGGCGGAcCCcuucuucgggacgGGcUCCACGUcGCUCa -3' miRNA: 3'- aCGCCGUCUaGG-------------UC-AGGUGCGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 132124 | 0.7 | 0.515343 |
Target: 5'- aGCGGCAGGcCCAGcUCGCGCcgGCg- -3' miRNA: 3'- aCGCCGUCUaGGUCaGGUGCGa-CGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 62177 | 0.7 | 0.525172 |
Target: 5'- aGaCGGCGGAggccgcccuggCCGuGUUCACGCUGCUg -3' miRNA: 3'- aC-GCCGUCUa----------GGU-CAGGUGCGACGAg -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 33925 | 0.7 | 0.525172 |
Target: 5'- gGCgGGCGGAUCgAGgcCCGCGCgccccggggGCUCg -3' miRNA: 3'- aCG-CCGUCUAGgUCa-GGUGCGa--------CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 105613 | 0.7 | 0.525172 |
Target: 5'- cGCGGUGGAUCCcgcccaAGUacgccgccuaCCGCgaGCUGCUCa -3' miRNA: 3'- aCGCCGUCUAGG------UCA----------GGUG--CGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 94290 | 0.7 | 0.534079 |
Target: 5'- aGCGGCAGGUCCgucucgagccagcGGUuggCCACGCUcaGCg- -3' miRNA: 3'- aCGCCGUCUAGG-------------UCA---GGUGCGA--CGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 113607 | 0.7 | 0.535072 |
Target: 5'- cGUGGCcGAgcgCCAGgcggacCCGCGCgUGCUCu -3' miRNA: 3'- aCGCCGuCUa--GGUCa-----GGUGCG-ACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 2609 | 0.7 | 0.545036 |
Target: 5'- gGCGGCAGcgggaccgggGUCCGGggCCcgGCGCgggUGCUCa -3' miRNA: 3'- aCGCCGUC----------UAGGUCa-GG--UGCG---ACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 78069 | 0.7 | 0.555059 |
Target: 5'- cGCGGCGGGagCCuGUCCcUGCagaUGCUCu -3' miRNA: 3'- aCGCCGUCUa-GGuCAGGuGCG---ACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 139563 | 0.7 | 0.555059 |
Target: 5'- aGCGGCGc--CCGGUCCGCGagcgccuggGCUCg -3' miRNA: 3'- aCGCCGUcuaGGUCAGGUGCga-------CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 70110 | 0.69 | 0.57526 |
Target: 5'- cGCGaGCGGGUCCAcGcCCGCGCgccGCa- -3' miRNA: 3'- aCGC-CGUCUAGGU-CaGGUGCGa--CGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 59148 | 0.69 | 0.595623 |
Target: 5'- cGCgGGCGGGUCCAGgccggcgUCGCGCaGCa- -3' miRNA: 3'- aCG-CCGUCUAGGUCa------GGUGCGaCGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 4565 | 0.69 | 0.605849 |
Target: 5'- gUGCGGCAGcggCgGGgUCACGCUGC-Cg -3' miRNA: 3'- -ACGCCGUCua-GgUCaGGUGCGACGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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