miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 30749 0.66 0.916682
Target:  5'- aGUGCCGCGGGcGGGGCggg-GGCa-- -3'
miRNA:   3'- -CGCGGCGCCUcCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 32779 0.66 0.910739
Target:  5'- aCGCCGCGGccgcGGGGGGCcgAAgcgGACg-- -3'
miRNA:   3'- cGCGGCGCC----UCCUCCGa-UUa--UUGgac -5'
29472 3' -55.3 NC_006151.1 + 35414 0.69 0.795018
Target:  5'- cCGCCGCGGGGGccGGGCaugcaAAUGGuCCUc -3'
miRNA:   3'- cGCGGCGCCUCC--UCCGa----UUAUU-GGAc -5'
29472 3' -55.3 NC_006151.1 + 37867 0.74 0.504056
Target:  5'- cGCGCCGCGGAcccccgcgccggGGAGGC----GACCg- -3'
miRNA:   3'- -CGCGGCGCCU------------CCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 39029 0.67 0.854784
Target:  5'- cGCGCCGCcuGGAuGcGGCaGAUAGCCg- -3'
miRNA:   3'- -CGCGGCG--CCUcCuCCGaUUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 40070 0.66 0.910739
Target:  5'- gGC-CCGCGGGGGccucGGGCgccggGGCCg- -3'
miRNA:   3'- -CGcGGCGCCUCC----UCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 44390 0.69 0.783021
Target:  5'- cCGCCGCGGGGGcgccgaggagggagGGGCgcGUGugCa- -3'
miRNA:   3'- cGCGGCGCCUCC--------------UCCGauUAUugGac -5'
29472 3' -55.3 NC_006151.1 + 46013 0.67 0.870119
Target:  5'- cGC-CCGUGGAGGGGGCgacgGAUgucGACg-- -3'
miRNA:   3'- -CGcGGCGCCUCCUCCGa---UUA---UUGgac -5'
29472 3' -55.3 NC_006151.1 + 46055 0.67 0.870119
Target:  5'- -aGCCGguaGGGGGGGGCUucgcGGUcAUCUGg -3'
miRNA:   3'- cgCGGCg--CCUCCUCCGA----UUAuUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 46947 0.66 0.898133
Target:  5'- uCGCCGCGGAcuGGGGCgac---CCUGu -3'
miRNA:   3'- cGCGGCGCCUc-CUCCGauuauuGGAC- -5'
29472 3' -55.3 NC_006151.1 + 49175 0.66 0.898133
Target:  5'- cGCGCCGCGGGGuGcugcuGCUGAacacgacgcUGACCg- -3'
miRNA:   3'- -CGCGGCGCCUC-Cuc---CGAUU---------AUUGGac -5'
29472 3' -55.3 NC_006151.1 + 49643 0.74 0.52377
Target:  5'- uGgGCCGUGGAGGAGGUcg--AGCCc- -3'
miRNA:   3'- -CgCGGCGCCUCCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 54152 1.1 0.002754
Target:  5'- gGCGCCGCGGAGGAGGCUAAUAACCUGu -3'
miRNA:   3'- -CGCGGCGCCUCCUCCGAUUAUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 55423 0.69 0.785811
Target:  5'- cGCGCCGCGcAGGcGGGCgcgGAcggGACCg- -3'
miRNA:   3'- -CGCGGCGCcUCC-UCCGa--UUa--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 56290 0.69 0.803176
Target:  5'- uGCcCCGCGGcGGAGGCggacgccgcgcgguGCCUGa -3'
miRNA:   3'- -CGcGGCGCCuCCUCCGauuau---------UGGAC- -5'
29472 3' -55.3 NC_006151.1 + 57144 0.67 0.891474
Target:  5'- uGCGCaCGCGGcGGGGGCgag-GGCg-- -3'
miRNA:   3'- -CGCG-GCGCCuCCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 58650 0.68 0.812973
Target:  5'- aGCGCCG-GGAGGGcgcGGCgcagGGCCg- -3'
miRNA:   3'- -CGCGGCgCCUCCU---CCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 64531 0.66 0.916682
Target:  5'- cCGCCGCGGccgcgucGGGGGCggcgaGGCCg- -3'
miRNA:   3'- cGCGGCGCCu------CCUCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 64957 0.66 0.922381
Target:  5'- cGCGCUGCGGGcGcAGGCcGAgcGCCa- -3'
miRNA:   3'- -CGCGGCGCCUcC-UCCGaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 65813 0.68 0.830257
Target:  5'- cGUGCCGCGGuGGAugGGCggccgcGCCa- -3'
miRNA:   3'- -CGCGGCGCCuCCU--CCGauuau-UGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.