miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 823 0.67 0.870119
Target:  5'- -gGCaGCGGGGGAGGCUGGgagugggGACg-- -3'
miRNA:   3'- cgCGgCGCCUCCUCCGAUUa------UUGgac -5'
29472 3' -55.3 NC_006151.1 + 1818 0.71 0.697727
Target:  5'- gGCGCCGgGGAGGcaagcgccgccGGGCcGAgggGACCg- -3'
miRNA:   3'- -CGCGGCgCCUCC-----------UCCGaUUa--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 3744 0.69 0.804075
Target:  5'- -gGCgGCGGGGGA-GCUGgcGUAGCCg- -3'
miRNA:   3'- cgCGgCGCCUCCUcCGAU--UAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 5049 0.69 0.804075
Target:  5'- cCGCgGCGGAGGAGGaggcgGAggaGGCCg- -3'
miRNA:   3'- cGCGgCGCCUCCUCCga---UUa--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 5642 0.75 0.432421
Target:  5'- gGCGCCgagaccggcccggcgGCGGGGGAGGCUGGggaagcgGGCCc- -3'
miRNA:   3'- -CGCGG---------------CGCCUCCUCCGAUUa------UUGGac -5'
29472 3' -55.3 NC_006151.1 + 5851 0.67 0.877462
Target:  5'- -gGCUGCGGAGGGGGacGAgcGCCc- -3'
miRNA:   3'- cgCGGCGCCUCCUCCgaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 11582 0.71 0.646379
Target:  5'- cGC-CCGcCGGGGGAGGCUucccggAACCa- -3'
miRNA:   3'- -CGcGGC-GCCUCCUCCGAuua---UUGGac -5'
29472 3' -55.3 NC_006151.1 + 12417 0.66 0.904555
Target:  5'- gGgGCUggGUGGGGuGAGGCgAGUGACCg- -3'
miRNA:   3'- -CgCGG--CGCCUC-CUCCGaUUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 12754 0.74 0.504056
Target:  5'- uCGCCGCGGAGGGcuGGCUcgaGGCCa- -3'
miRNA:   3'- cGCGGCGCCUCCU--CCGAuuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 17131 0.71 0.687533
Target:  5'- gGUGCUGCgGGAGGcGGCcagGAgcACCUGg -3'
miRNA:   3'- -CGCGGCG-CCUCCuCCGa--UUauUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 17270 0.74 0.52377
Target:  5'- -aGCCGCGGGGGcGGGCUGAUAc---- -3'
miRNA:   3'- cgCGGCGCCUCC-UCCGAUUAUuggac -5'
29472 3' -55.3 NC_006151.1 + 20142 0.8 0.230607
Target:  5'- gGCGCCGCGGGGGcGGCgcgugGACCg- -3'
miRNA:   3'- -CGCGGCGCCUCCuCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 21333 0.66 0.898133
Target:  5'- gGCGCgGCGGGGGuccgcGGCUGG-AACg-- -3'
miRNA:   3'- -CGCGgCGCCUCCu----CCGAUUaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 23426 0.66 0.898133
Target:  5'- -gGCCGUGGGGGcgauGGGUgggagGGUGGCCc- -3'
miRNA:   3'- cgCGGCGCCUCC----UCCGa----UUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 27173 0.68 0.846805
Target:  5'- gGCGCCGCGuGucGGGGCgccagggGGCCg- -3'
miRNA:   3'- -CGCGGCGC-CucCUCCGauua---UUGGac -5'
29472 3' -55.3 NC_006151.1 + 29208 0.66 0.898133
Target:  5'- gGCGCgGCGGGGuGGGGaugGGUcACCg- -3'
miRNA:   3'- -CGCGgCGCCUC-CUCCga-UUAuUGGac -5'
29472 3' -55.3 NC_006151.1 + 29433 0.66 0.922381
Target:  5'- -gGCCGCGGGGGGcGGCgggGAgagggGACg-- -3'
miRNA:   3'- cgCGGCGCCUCCU-CCGa--UUa----UUGgac -5'
29472 3' -55.3 NC_006151.1 + 29476 0.69 0.804075
Target:  5'- cGCGCCGgGaGAGGAaagGGCgcgcUGGCCUc -3'
miRNA:   3'- -CGCGGCgC-CUCCU---CCGauu-AUUGGAc -5'
29472 3' -55.3 NC_006151.1 + 29599 0.68 0.830257
Target:  5'- uGCgGCCGCGGcggcGGGGGCUGGUGu---- -3'
miRNA:   3'- -CG-CGGCGCCu---CCUCCGAUUAUuggac -5'
29472 3' -55.3 NC_006151.1 + 30629 0.79 0.272597
Target:  5'- cGCGCUGUgcgggugggugggGGAGGGGGUUGAUGGCCg- -3'
miRNA:   3'- -CGCGGCG-------------CCUCCUCCGAUUAUUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.