miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 54152 1.1 0.002754
Target:  5'- gGCGCCGCGGAGGAGGCUAAUAACCUGu -3'
miRNA:   3'- -CGCGGCGCCUCCUCCGAUUAUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 20142 0.8 0.230607
Target:  5'- gGCGCCGCGGGGGcGGCgcgugGACCg- -3'
miRNA:   3'- -CGCGGCGCCUCCuCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 30629 0.79 0.272597
Target:  5'- cGCGCUGUgcgggugggugggGGAGGGGGUUGAUGGCCg- -3'
miRNA:   3'- -CGCGGCG-------------CCUCCUCCGAUUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 104839 0.77 0.368712
Target:  5'- uCGCCGCGGcGGAGGCg---GACCa- -3'
miRNA:   3'- cGCGGCGCCuCCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 70130 0.77 0.376938
Target:  5'- cGCGCCGCaGGAGGGGGUccgggacGAUGACgUGc -3'
miRNA:   3'- -CGCGGCG-CCUCCUCCGa------UUAUUGgAC- -5'
29472 3' -55.3 NC_006151.1 + 84788 0.76 0.411054
Target:  5'- cGCGCCGCcGAGGAGGCgcccGAggcGACCg- -3'
miRNA:   3'- -CGCGGCGcCUCCUCCGa---UUa--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 5642 0.75 0.432421
Target:  5'- gGCGCCgagaccggcccggcgGCGGGGGAGGCUGGggaagcgGGCCc- -3'
miRNA:   3'- -CGCGG---------------CGCCUCCUCCGAUUa------UUGGac -5'
29472 3' -55.3 NC_006151.1 + 37867 0.74 0.504056
Target:  5'- cGCGCCGCGGAcccccgcgccggGGAGGC----GACCg- -3'
miRNA:   3'- -CGCGGCGCCU------------CCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 12754 0.74 0.504056
Target:  5'- uCGCCGCGGAGGGcuGGCUcgaGGCCa- -3'
miRNA:   3'- cGCGGCGCCUCCU--CCGAuuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 105054 0.74 0.504056
Target:  5'- gGCGCCGUcGAGGAGGCgcccGAgCUGg -3'
miRNA:   3'- -CGCGGCGcCUCCUCCGauuaUUgGAC- -5'
29472 3' -55.3 NC_006151.1 + 84761 0.74 0.513874
Target:  5'- cGCGCCGCcGAGGAGGCg---GACg-- -3'
miRNA:   3'- -CGCGGCGcCUCCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 49643 0.74 0.52377
Target:  5'- uGgGCCGUGGAGGAGGUcg--AGCCc- -3'
miRNA:   3'- -CgCGGCGCCUCCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 17270 0.74 0.52377
Target:  5'- -aGCCGCGGGGGcGGGCUGAUAc---- -3'
miRNA:   3'- cgCGGCGCCUCC-UCCGAUUAUuggac -5'
29472 3' -55.3 NC_006151.1 + 100464 0.73 0.564017
Target:  5'- gGCGCUGCGcGAGugcGAGGCgcugGGCCUGc -3'
miRNA:   3'- -CGCGGCGC-CUC---CUCCGauuaUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 88018 0.72 0.594732
Target:  5'- aCGgaCGCGGGGGAGGCgucGUAGCgCUGc -3'
miRNA:   3'- cGCg-GCGCCUCCUCCGau-UAUUG-GAC- -5'
29472 3' -55.3 NC_006151.1 + 122953 0.72 0.61536
Target:  5'- gGCGCCGCGGGGGGcGCggac-GCCg- -3'
miRNA:   3'- -CGCGGCGCCUCCUcCGauuauUGGac -5'
29472 3' -55.3 NC_006151.1 + 112986 0.71 0.646379
Target:  5'- cGCGCCGCcGAgccugGGGGGCUGGaagGACCa- -3'
miRNA:   3'- -CGCGGCGcCU-----CCUCCGAUUa--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 11582 0.71 0.646379
Target:  5'- cGC-CCGcCGGGGGAGGCUucccggAACCa- -3'
miRNA:   3'- -CGcGGC-GCCUCCUCCGAuua---UUGGac -5'
29472 3' -55.3 NC_006151.1 + 93566 0.71 0.656706
Target:  5'- cCGCCGCGGGGGcGGGCgc---GCCa- -3'
miRNA:   3'- cGCGGCGCCUCC-UCCGauuauUGGac -5'
29472 3' -55.3 NC_006151.1 + 100311 0.71 0.656706
Target:  5'- cGCGCC-CGG-GGAGGgUGGgcccuGCCUGg -3'
miRNA:   3'- -CGCGGcGCCuCCUCCgAUUau---UGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.