miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 23094 0.77 0.210561
Target:  5'- uCGCuGGAggucagcUCCUCGUCCuccucgGCCCCGCGCCc -3'
miRNA:   3'- -GCG-CCU-------AGGAGUAGG------UGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 24295 0.67 0.716698
Target:  5'- gGCGGGaacUCCUCgggGUgCACCCCgaggGCGCgGa -3'
miRNA:   3'- gCGCCU---AGGAG---UAgGUGGGG----UGCGgC- -5'
29472 5' -59.9 NC_006151.1 + 25412 0.68 0.638161
Target:  5'- gGgGGcgCCg---CCGCCCCACGCgCGc -3'
miRNA:   3'- gCgCCuaGGaguaGGUGGGGUGCG-GC- -5'
29472 5' -59.9 NC_006151.1 + 27152 0.68 0.648074
Target:  5'- gGCGGuUCa-CGUCgGCCCCgagGCGCCGc -3'
miRNA:   3'- gCGCCuAGgaGUAGgUGGGG---UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 28113 0.77 0.216159
Target:  5'- gCGCGGcUCCUCGUCggcucggggcgCGCUCCGCGCCu -3'
miRNA:   3'- -GCGCCuAGGAGUAG-----------GUGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 31785 0.66 0.726295
Target:  5'- gGCGGcucUCCUCcUUCACCgC-CGCCGc -3'
miRNA:   3'- gCGCCu--AGGAGuAGGUGGgGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 32612 0.66 0.772972
Target:  5'- gCGCGGGgcgccgcgCCUCucccucccgcuUCC-CCCCuCGCCGc -3'
miRNA:   3'- -GCGCCUa-------GGAGu----------AGGuGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 33899 0.67 0.697307
Target:  5'- gGCGGGggCCUCG--CGCCuCCGCGuCCGg -3'
miRNA:   3'- gCGCCUa-GGAGUagGUGG-GGUGC-GGC- -5'
29472 5' -59.9 NC_006151.1 + 35083 0.67 0.687531
Target:  5'- gGUGGGUCgCgugccgagCAUgCGCCUCGCGCCc -3'
miRNA:   3'- gCGCCUAG-Ga-------GUAgGUGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 35199 0.66 0.76384
Target:  5'- gCGCGGGagacgCCUCcgCgCGCCCaUugGCCc -3'
miRNA:   3'- -GCGCCUa----GGAGuaG-GUGGG-GugCGGc -5'
29472 5' -59.9 NC_006151.1 + 36588 0.67 0.688511
Target:  5'- gGCGGGggcccgcuuccccagCCUCccCCGCCgCCGgGCCGg -3'
miRNA:   3'- gCGCCUa--------------GGAGuaGGUGG-GGUgCGGC- -5'
29472 5' -59.9 NC_006151.1 + 36732 0.7 0.539909
Target:  5'- gGCGGcucgAUCCUCggCCGCUUgGCGCCc -3'
miRNA:   3'- gCGCC----UAGGAGuaGGUGGGgUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 37192 0.68 0.657975
Target:  5'- cCGCGGcccucggCCUCcUCCGCCuCCuccucCGCCGc -3'
miRNA:   3'- -GCGCCua-----GGAGuAGGUGG-GGu----GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 37994 0.67 0.675743
Target:  5'- cCGCGGcGUCCUCGagcgccugcugcCCugCCCGCuCCGg -3'
miRNA:   3'- -GCGCC-UAGGAGUa-----------GGugGGGUGcGGC- -5'
29472 5' -59.9 NC_006151.1 + 38251 0.67 0.697307
Target:  5'- cCGCGGc-CCUC-UUCGCCCCG-GCCa -3'
miRNA:   3'- -GCGCCuaGGAGuAGGUGGGGUgCGGc -5'
29472 5' -59.9 NC_006151.1 + 38829 0.69 0.58867
Target:  5'- gGCGGcuUCCgccgCGUCCcggccggcgagACCCaCACGCCGc -3'
miRNA:   3'- gCGCCu-AGGa---GUAGG-----------UGGG-GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 39007 0.78 0.191711
Target:  5'- cCGCGGcgCCcCGcUCCGCCgCCGCGCCGc -3'
miRNA:   3'- -GCGCCuaGGaGU-AGGUGG-GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 39296 0.67 0.707032
Target:  5'- gCGCGGGaCCUCGgcUUCG-CCgGCGCCGu -3'
miRNA:   3'- -GCGCCUaGGAGU--AGGUgGGgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 43947 0.66 0.754597
Target:  5'- cCGgGGGcCCUCcccggCCGCCCCGaccCGCCc -3'
miRNA:   3'- -GCgCCUaGGAGua---GGUGGGGU---GCGGc -5'
29472 5' -59.9 NC_006151.1 + 49445 0.66 0.76384
Target:  5'- aCGCGua-CCUCGUCCagacgggccggGCCCC-CGUCGa -3'
miRNA:   3'- -GCGCcuaGGAGUAGG-----------UGGGGuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.