miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 531 0.67 0.687531
Target:  5'- -aCGGAU-CUCAUCUGCauaUCGCGCCGg -3'
miRNA:   3'- gcGCCUAgGAGUAGGUGg--GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 594 0.67 0.687531
Target:  5'- -aCGGAU-CUCAUCUGCauaUCGCGCCGg -3'
miRNA:   3'- gcGCCUAgGAGUAGGUGg--GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 721 0.66 0.726295
Target:  5'- cCGgGGGUCCgCGggcgggggcuUCCGCUCCGCGgCGc -3'
miRNA:   3'- -GCgCCUAGGaGU----------AGGUGGGGUGCgGC- -5'
29472 5' -59.9 NC_006151.1 + 2114 0.66 0.735817
Target:  5'- cCGCGGggCCggccgUcgCCGCCgCggACGCCGa -3'
miRNA:   3'- -GCGCCuaGGa----GuaGGUGGgG--UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 2880 0.67 0.704121
Target:  5'- cCGCGGGccagUCCUCgaugguGUCCagcacgaugagccgGCgCCGCGCCGc -3'
miRNA:   3'- -GCGCCU----AGGAG------UAGG--------------UGgGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 4822 0.76 0.245513
Target:  5'- gGCGGAcgucgUCCUCGUCCcagaGCCCCucgcgggaguccccgGCGCCGc -3'
miRNA:   3'- gCGCCU-----AGGAGUAGG----UGGGG---------------UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 5343 0.66 0.745254
Target:  5'- gGCGGAgggcgcCCUC-UCCGgCgCgGCGCCGg -3'
miRNA:   3'- gCGCCUa-----GGAGuAGGUgG-GgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 8297 0.68 0.608424
Target:  5'- gCGCGGGcgCCgCGUcCCGCCCCGaGCCc -3'
miRNA:   3'- -GCGCCUa-GGaGUA-GGUGGGGUgCGGc -5'
29472 5' -59.9 NC_006151.1 + 8333 0.69 0.559277
Target:  5'- gCGCGGG-CCUCGaUCGCgCC-CGCCGg -3'
miRNA:   3'- -GCGCCUaGGAGUaGGUGgGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 9396 0.69 0.597548
Target:  5'- gCGCGGGUCgggccuuCUUccCCAUCCC-CGCCGg -3'
miRNA:   3'- -GCGCCUAG-------GAGuaGGUGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 10530 0.74 0.332557
Target:  5'- gCGCGGGcgCCUCuccacgccccguUCCGCCCgGCGCCc -3'
miRNA:   3'- -GCGCCUa-GGAGu-----------AGGUGGGgUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 12282 0.66 0.735817
Target:  5'- cCGCGGG-CC-CAUUCACCau-CGCCGc -3'
miRNA:   3'- -GCGCCUaGGaGUAGGUGGgguGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 13043 0.66 0.745254
Target:  5'- gGCGGugaCC-CAUCCccACCCCgccGCGCCc -3'
miRNA:   3'- gCGCCua-GGaGUAGG--UGGGG---UGCGGc -5'
29472 5' -59.9 NC_006151.1 + 14082 0.66 0.745254
Target:  5'- cCGaCGGca-CUCG-CCGCCCCaacgACGCCGa -3'
miRNA:   3'- -GC-GCCuagGAGUaGGUGGGG----UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 15935 0.69 0.598535
Target:  5'- gGCGGG-CCUC----GCCCCGCGCUGu -3'
miRNA:   3'- gCGCCUaGGAGuaggUGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 16880 0.7 0.520773
Target:  5'- uCGCGGGgcgcgcucgcgUCCguugccgCGcCCGCCCCGgCGCCGg -3'
miRNA:   3'- -GCGCCU-----------AGGa------GUaGGUGGGGU-GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 16956 0.66 0.744314
Target:  5'- uGCaGGG-CCUCGUCCACUCgCcggcgugGCGCCa -3'
miRNA:   3'- gCG-CCUaGGAGUAGGUGGG-G-------UGCGGc -5'
29472 5' -59.9 NC_006151.1 + 17473 0.73 0.371956
Target:  5'- cCGCGGcguGUCCUCGUCgGCggCGCGCCGc -3'
miRNA:   3'- -GCGCC---UAGGAGUAGgUGggGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 20690 0.69 0.598535
Target:  5'- aCGCGGAcCCgcagcaCGUaCgACCCCGCGuCCGg -3'
miRNA:   3'- -GCGCCUaGGa-----GUA-GgUGGGGUGC-GGC- -5'
29472 5' -59.9 NC_006151.1 + 22290 0.73 0.371956
Target:  5'- gCGCGGG-CacggCGUCCACgUCCGCGCCGa -3'
miRNA:   3'- -GCGCCUaGga--GUAGGUG-GGGUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.