miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 54191 1.07 0.001752
Target:  5'- uCGCGGAUCCUCAUCCACCCCACGCCGc -3'
miRNA:   3'- -GCGCCUAGGAGUAGGUGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 134525 0.79 0.146335
Target:  5'- cCGCGGcAUCgUCGUCUuCCCCACGCCc -3'
miRNA:   3'- -GCGCC-UAGgAGUAGGuGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 39007 0.78 0.191711
Target:  5'- cCGCGGcgCCcCGcUCCGCCgCCGCGCCGc -3'
miRNA:   3'- -GCGCCuaGGaGU-AGGUGG-GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 23094 0.77 0.210561
Target:  5'- uCGCuGGAggucagcUCCUCGUCCuccucgGCCCCGCGCCc -3'
miRNA:   3'- -GCG-CCU-------AGGAGUAGG------UGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 28113 0.77 0.216159
Target:  5'- gCGCGGcUCCUCGUCggcucggggcgCGCUCCGCGCCu -3'
miRNA:   3'- -GCGCCuAGGAGUAG-----------GUGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 69504 0.76 0.243229
Target:  5'- cCGCGccgCCUCcUCCGCCgCCGCGCCGc -3'
miRNA:   3'- -GCGCcuaGGAGuAGGUGG-GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 4822 0.76 0.245513
Target:  5'- gGCGGAcgucgUCCUCGUCCcagaGCCCCucgcgggaguccccgGCGCCGc -3'
miRNA:   3'- gCGCCU-----AGGAGUAGG----UGGGG---------------UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 10530 0.74 0.332557
Target:  5'- gCGCGGGcgCCUCuccacgccccguUCCGCCCgGCGCCc -3'
miRNA:   3'- -GCGCCUa-GGAGu-----------AGGUGGGgUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 17473 0.73 0.371956
Target:  5'- cCGCGGcguGUCCUCGUCgGCggCGCGCCGc -3'
miRNA:   3'- -GCGCC---UAGGAGUAGgUGggGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 58511 0.73 0.371956
Target:  5'- gCGCGGGccggccucgUCCUCGUCCuCCUCGcCGCCc -3'
miRNA:   3'- -GCGCCU---------AGGAGUAGGuGGGGU-GCGGc -5'
29472 5' -59.9 NC_006151.1 + 22290 0.73 0.371956
Target:  5'- gCGCGGG-CacggCGUCCACgUCCGCGCCGa -3'
miRNA:   3'- -GCGCCUaGga--GUAGGUG-GGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 135052 0.72 0.404355
Target:  5'- gGCGGucccccUCCUCGUCUuCCCC-CGCCu -3'
miRNA:   3'- gCGCCu-----AGGAGUAGGuGGGGuGCGGc -5'
29472 5' -59.9 NC_006151.1 + 70114 0.72 0.421208
Target:  5'- aGCGGGUCCa----CGCCCgCGCGCCGc -3'
miRNA:   3'- gCGCCUAGGaguagGUGGG-GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 82961 0.72 0.421208
Target:  5'- aCGCGGA--CUCcgUCACCuCCAUGCCGc -3'
miRNA:   3'- -GCGCCUagGAGuaGGUGG-GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 65748 0.72 0.429792
Target:  5'- aGCcgGGAggCCUCGUCCccguCCCCGuCGCCGc -3'
miRNA:   3'- gCG--CCUa-GGAGUAGGu---GGGGU-GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 94003 0.71 0.465124
Target:  5'- gGCGGAUggCCUCGUCCcgcagcGCCgCGCGCaCGu -3'
miRNA:   3'- gCGCCUA--GGAGUAGG------UGGgGUGCG-GC- -5'
29472 5' -59.9 NC_006151.1 + 84443 0.71 0.483348
Target:  5'- gCGCGGc-CCaUGUCC-CCCCGCGCCa -3'
miRNA:   3'- -GCGCCuaGGaGUAGGuGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 77183 0.7 0.520773
Target:  5'- cCGCGuccacGUCCgccgccgCGUCCuccauCCCCGCGCCGc -3'
miRNA:   3'- -GCGCc----UAGGa------GUAGGu----GGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 106062 0.7 0.520773
Target:  5'- uCGCGcg-CUUCGUgcgCCACCgCCGCGCCGa -3'
miRNA:   3'- -GCGCcuaGGAGUA---GGUGG-GGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 63757 0.7 0.520773
Target:  5'- gGCGGGgcgUCCUCGg-CGCCCCcGCGUCGc -3'
miRNA:   3'- gCGCCU---AGGAGUagGUGGGG-UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.