miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 136980 0.66 0.545174
Target:  5'- gGCCG-CCGCgCCGGGCggCGGGCgCg- -3'
miRNA:   3'- -CGGUgGGCGaGGUCCGa-GUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 138312 0.66 0.545174
Target:  5'- uCCGCgCGCUUCAGcuGCcugCGGGCCCg- -3'
miRNA:   3'- cGGUGgGCGAGGUC--CGa--GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 9388 0.66 0.545174
Target:  5'- gGCCcCCCGCg-CGGG-UCGGGCCUUc -3'
miRNA:   3'- -CGGuGGGCGagGUCCgAGUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 46842 0.66 0.574219
Target:  5'- cGCCGCCC-C-CCGGGg-CGGGCCUc- -3'
miRNA:   3'- -CGGUGGGcGaGGUCCgaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 124125 0.66 0.574219
Target:  5'- cGCCGuCCgGCUCCAcgguggugcGGCUggagcccgagCAGGCCUg- -3'
miRNA:   3'- -CGGU-GGgCGAGGU---------CCGA----------GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 78956 0.66 0.535594
Target:  5'- cCCGCCCGCcUCGGuCUCGGuGCCCc- -3'
miRNA:   3'- cGGUGGGCGaGGUCcGAGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 18361 0.66 0.535594
Target:  5'- uGCUgaACUCGUccucggcgUCCAGGCUCAcguacGGCCCc- -3'
miRNA:   3'- -CGG--UGGGCG--------AGGUCCGAGU-----CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38017 0.67 0.488683
Target:  5'- uGCCcuGCCCGCUCC-GGCU---GCCCg- -3'
miRNA:   3'- -CGG--UGGGCGAGGuCCGAgucCGGGac -5'
29474 3' -63.3 NC_006151.1 + 96579 0.67 0.497919
Target:  5'- cGCCGCCuCGCggcgcgaggcgCCGGGCgCGGGCgCg- -3'
miRNA:   3'- -CGGUGG-GCGa----------GGUCCGaGUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 99886 0.67 0.497919
Target:  5'- cGCCGCgCGgaCCuGGCgCAGGUgCUGa -3'
miRNA:   3'- -CGGUGgGCgaGGuCCGaGUCCGgGAC- -5'
29474 3' -63.3 NC_006151.1 + 82699 0.67 0.507232
Target:  5'- gGCC-CCCGCgagggCCAGG---AGGCCCg- -3'
miRNA:   3'- -CGGuGGGCGa----GGUCCgagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 47072 0.67 0.507232
Target:  5'- cCCGguCCUGCUCC-GGCUCccGGCCCc- -3'
miRNA:   3'- cGGU--GGGCGAGGuCCGAGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 77892 0.67 0.507232
Target:  5'- cGCCcCCCGCUCagcGGCgagaCGcGGCCCa- -3'
miRNA:   3'- -CGGuGGGCGAGgu-CCGa---GU-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 98343 0.66 0.516618
Target:  5'- gGCCGCgagaCGCcCgCGGGCgugcgCGGGCUCUGg -3'
miRNA:   3'- -CGGUGg---GCGaG-GUCCGa----GUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 84959 0.66 0.516618
Target:  5'- -aCGCCaCGCUCCAGGC-CAcGCUCg- -3'
miRNA:   3'- cgGUGG-GCGAGGUCCGaGUcCGGGac -5'
29474 3' -63.3 NC_006151.1 + 15883 0.66 0.525125
Target:  5'- cGCCGCCCGC-CgGGGgaCGcgcgccccgacgcGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGaGgUCCgaGU-------------CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 82134 0.66 0.526074
Target:  5'- aGCgGCCCGCgggcgggCCcggcGGCUCcAGGUCCg- -3'
miRNA:   3'- -CGgUGGGCGa------GGu---CCGAG-UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 128426 0.66 0.526074
Target:  5'- cGCaCACgCCGCUCUuccaGGGCgUCucGGCCCa- -3'
miRNA:   3'- -CG-GUG-GGCGAGG----UCCG-AGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 95337 0.66 0.526074
Target:  5'- cGCCGCCCGC--CAGGCacgcgggCAGGUUCa- -3'
miRNA:   3'- -CGGUGGGCGagGUCCGa------GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 114135 0.66 0.526074
Target:  5'- cGCCG-CCGCcgagCCGcGGCUCGGGCgCa- -3'
miRNA:   3'- -CGGUgGGCGa---GGU-CCGAGUCCGgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.