miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 56526 0.7 0.331699
Target:  5'- cGCCcucUUCGCcgCCGGGUUCGGGCCCc- -3'
miRNA:   3'- -CGGu--GGGCGa-GGUCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 57757 0.69 0.361506
Target:  5'- aGCCGCUCGUggcCCGGGCaCAGGgCCa- -3'
miRNA:   3'- -CGGUGGGCGa--GGUCCGaGUCCgGGac -5'
29474 3' -63.3 NC_006151.1 + 58573 0.67 0.467753
Target:  5'- cGCCGCCCGCcggcgucgcggccgUgaCCAGGUUCGuGGCCg-- -3'
miRNA:   3'- -CGGUGGGCG--------------A--GGUCCGAGU-CCGGgac -5'
29474 3' -63.3 NC_006151.1 + 58863 0.66 0.545174
Target:  5'- aGCuCGCCCgGCgcgCCGGGUccgucCAGGCCgUGu -3'
miRNA:   3'- -CG-GUGGG-CGa--GGUCCGa----GUCCGGgAC- -5'
29474 3' -63.3 NC_006151.1 + 59050 0.7 0.324535
Target:  5'- --aGCCgGCUCCAGGCgggCAGGCgCa- -3'
miRNA:   3'- cggUGGgCGAGGUCCGa--GUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 59331 0.71 0.290452
Target:  5'- cCCGCCCGCccCCAGcgcGCUCAGGgCCg- -3'
miRNA:   3'- cGGUGGGCGa-GGUC---CGAGUCCgGGac -5'
29474 3' -63.3 NC_006151.1 + 61661 0.74 0.195487
Target:  5'- cGCCAgCCGCUCguGGCcCccGCCCUGu -3'
miRNA:   3'- -CGGUgGGCGAGguCCGaGucCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 61729 0.67 0.470457
Target:  5'- gGCCACCgUGCUgCuGGCgCAcGCCCUGu -3'
miRNA:   3'- -CGGUGG-GCGAgGuCCGaGUcCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 63773 0.66 0.545174
Target:  5'- cGCC-CCCGCgucgCCAGGCg-GGGUCg-- -3'
miRNA:   3'- -CGGuGGGCGa---GGUCCGagUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 64189 0.72 0.265254
Target:  5'- cGCCGCCCGCgaucgccCCGGGC--AGGUCCg- -3'
miRNA:   3'- -CGGUGGGCGa------GGUCCGagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 64624 0.66 0.545174
Target:  5'- cGCCGCCgGCcgCgGGGCgCGGcGCCCc- -3'
miRNA:   3'- -CGGUGGgCGa-GgUCCGaGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 64949 0.7 0.338978
Target:  5'- cGCCugGCCgCGCUgCGGGCgCAGGCCgaGc -3'
miRNA:   3'- -CGG--UGG-GCGAgGUCCGaGUCCGGgaC- -5'
29474 3' -63.3 NC_006151.1 + 67506 0.68 0.443788
Target:  5'- cGCgGCUCGCgUCCGGGUcCAGGgCCa- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGaGUCCgGGac -5'
29474 3' -63.3 NC_006151.1 + 68216 0.7 0.324535
Target:  5'- aGCgGCCCuGCgCCAGGCgCAGcGCCCg- -3'
miRNA:   3'- -CGgUGGG-CGaGGUCCGaGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 68642 0.69 0.385055
Target:  5'- cGUCGCCgGCUCCAcugccacggccGGCg-GGGCCCg- -3'
miRNA:   3'- -CGGUGGgCGAGGU-----------CCGagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 72076 0.68 0.409596
Target:  5'- aCCACCCGCgCCGucaGCUCGcGGgCCUGg -3'
miRNA:   3'- cGGUGGGCGaGGUc--CGAGU-CCgGGAC- -5'
29474 3' -63.3 NC_006151.1 + 72632 0.67 0.470457
Target:  5'- gGCgGuCCCGCggucCCGcGGCUCAGGCgCUc -3'
miRNA:   3'- -CGgU-GGGCGa---GGU-CCGAGUCCGgGAc -5'
29474 3' -63.3 NC_006151.1 + 73203 0.81 0.061398
Target:  5'- uGCUGCCCGCgggCCAGGCccgCGGGCaCCUGg -3'
miRNA:   3'- -CGGUGGGCGa--GGUCCGa--GUCCG-GGAC- -5'
29474 3' -63.3 NC_006151.1 + 76833 0.68 0.433361
Target:  5'- gGCgGCCCGCgUCCGGGCgacguacaggaAGGCCa-- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGag---------UCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 77892 0.67 0.507232
Target:  5'- cGCCcCCCGCUCagcGGCgagaCGcGGCCCa- -3'
miRNA:   3'- -CGGuGGGCGAGgu-CCGa---GU-CCGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.