miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 38300 0.71 0.290452
Target:  5'- gGCCGCCgCGCggcCCGGGCccgCGGaGCCCg- -3'
miRNA:   3'- -CGGUGG-GCGa--GGUCCGa--GUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 38332 0.67 0.479528
Target:  5'- cGCCcgGCCUGC-CCccGCUCuGGCCCg- -3'
miRNA:   3'- -CGG--UGGGCGaGGucCGAGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38402 0.67 0.461475
Target:  5'- gGgCGCCCcCUCCGgccuccccGGCUcCGGGCCCUc -3'
miRNA:   3'- -CgGUGGGcGAGGU--------CCGA-GUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 38686 0.7 0.331699
Target:  5'- gGCCccggcgcaaGCgCCGCUCCcucGGaCUCGGGCCCg- -3'
miRNA:   3'- -CGG---------UG-GGCGAGGu--CC-GAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38776 0.73 0.220206
Target:  5'- aCgACCgGCUCCGGcgcccGCUCGGGCCCa- -3'
miRNA:   3'- cGgUGGgCGAGGUC-----CGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 39726 0.72 0.247541
Target:  5'- cCCGCCagCGCUCCGcGCUCGGGCUCg- -3'
miRNA:   3'- cGGUGG--GCGAGGUcCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 39796 0.7 0.317487
Target:  5'- gGCCAaCCGCUggGGGCUCGGcGCCCc- -3'
miRNA:   3'- -CGGUgGGCGAggUCCGAGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 40153 0.71 0.283981
Target:  5'- gGCCGgcCCCGCggCCc-GCUCGGGCCCa- -3'
miRNA:   3'- -CGGU--GGGCGa-GGucCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 40295 0.67 0.470457
Target:  5'- cCgGCCC-CUCCAccGGCUCcucgAGGCCCUu -3'
miRNA:   3'- cGgUGGGcGAGGU--CCGAG----UCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 46842 0.66 0.574219
Target:  5'- cGCCGCCC-C-CCGGGg-CGGGCCUc- -3'
miRNA:   3'- -CGGUGGGcGaGGUCCgaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 47072 0.67 0.507232
Target:  5'- cCCGguCCUGCUCC-GGCUCccGGCCCc- -3'
miRNA:   3'- cGGU--GGGCGAGGuCCGAGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 47110 0.68 0.435089
Target:  5'- cGCU-CCUGCUgCGGGuCUcCAGGCCCa- -3'
miRNA:   3'- -CGGuGGGCGAgGUCC-GA-GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 48269 0.67 0.479528
Target:  5'- aCCACCCGCUgCUGGGCcUCGagccGCCCg- -3'
miRNA:   3'- cGGUGGGCGA-GGUCCG-AGUc---CGGGac -5'
29474 3' -63.3 NC_006151.1 + 48664 0.66 0.545174
Target:  5'- aGCC-CCCGC-CgGGGCagGGGCCg-- -3'
miRNA:   3'- -CGGuGGGCGaGgUCCGagUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 49015 0.71 0.271383
Target:  5'- gGCCaggACCCGUaccacgggCCGGGC-CAGGCCCa- -3'
miRNA:   3'- -CGG---UGGGCGa-------GGUCCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 49943 0.67 0.488683
Target:  5'- uCCGCCgGgaCCuGGC-CGcGGCCCUGg -3'
miRNA:   3'- cGGUGGgCgaGGuCCGaGU-CCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 51181 0.67 0.479528
Target:  5'- uGCaggGCCCGCUCCAcgacgaggguGGCcagCAGGCCg-- -3'
miRNA:   3'- -CGg--UGGGCGAGGU----------CCGa--GUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 51790 1.08 0.000629
Target:  5'- gGCCACCCGCUCCAGGCUCAGGCCCUGc -3'
miRNA:   3'- -CGGUGGGCGAGGUCCGAGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 53519 0.69 0.385055
Target:  5'- cGCCGCgcgccccgugagCCGCUCCAgGGCgcgCAGGCgCg- -3'
miRNA:   3'- -CGGUG------------GGCGAGGU-CCGa--GUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 54694 0.66 0.545174
Target:  5'- cGUCGCCgGCagcgugCUGGGC-CAGGgCCUGg -3'
miRNA:   3'- -CGGUGGgCGa-----GGUCCGaGUCCgGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.