miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 114076 0.69 0.385055
Target:  5'- uGCCugUCGCUCuCGGGCaUGGGCuacuaCCUGg -3'
miRNA:   3'- -CGGugGGCGAG-GUCCGaGUCCG-----GGAC- -5'
29474 3' -63.3 NC_006151.1 + 113302 0.67 0.479528
Target:  5'- cGCUACCgCGCgguggacgCCAcGCUgGGGCCCg- -3'
miRNA:   3'- -CGGUGG-GCGa-------GGUcCGAgUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 110148 0.75 0.149524
Target:  5'- cGCCACCgGaCUCgGGGCcCuGGCCCUGc -3'
miRNA:   3'- -CGGUGGgC-GAGgUCCGaGuCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 109120 0.66 0.545174
Target:  5'- cGCCgGCCCGCgcccgCC-GGC-CGGGCaCCUc -3'
miRNA:   3'- -CGG-UGGGCGa----GGuCCGaGUCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 106854 0.67 0.479528
Target:  5'- -gUACUCGC-CC-GGCUCGGGCCUg- -3'
miRNA:   3'- cgGUGGGCGaGGuCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 101589 0.69 0.393127
Target:  5'- cGCCGCCagcgaGCUCCgguGGGC-CGGGgCCUu -3'
miRNA:   3'- -CGGUGGg----CGAGG---UCCGaGUCCgGGAc -5'
29474 3' -63.3 NC_006151.1 + 99886 0.67 0.497919
Target:  5'- cGCCGCgCGgaCCuGGCgCAGGUgCUGa -3'
miRNA:   3'- -CGGUGgGCgaGGuCCGaGUCCGgGAC- -5'
29474 3' -63.3 NC_006151.1 + 98343 0.66 0.516618
Target:  5'- gGCCGCgagaCGCcCgCGGGCgugcgCGGGCUCUGg -3'
miRNA:   3'- -CGGUGg---GCGaG-GUCCGa----GUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 96579 0.67 0.497919
Target:  5'- cGCCGCCuCGCggcgcgaggcgCCGGGCgCGGGCgCg- -3'
miRNA:   3'- -CGGUGG-GCGa----------GGUCCGaGUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 95337 0.66 0.526074
Target:  5'- cGCCGCCCGC--CAGGCacgcgggCAGGUUCa- -3'
miRNA:   3'- -CGGUGGGCGagGUCCGa------GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 88857 0.68 0.443788
Target:  5'- aGCCGCUCccgcgggaGCUCCGGGCgcggGGGCUCg- -3'
miRNA:   3'- -CGGUGGG--------CGAGGUCCGag--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 87546 0.74 0.181848
Target:  5'- aGCCGCCCG-UCCAGGCcUCGgucucGGCCCc- -3'
miRNA:   3'- -CGGUGGGCgAGGUCCG-AGU-----CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 86183 0.66 0.545174
Target:  5'- gGCCGCCgCGCUgccCCcGGC--GGGCCCg- -3'
miRNA:   3'- -CGGUGG-GCGA---GGuCCGagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 86099 0.66 0.544213
Target:  5'- cGCCaugggGCCCGUguacgugUCC-GGCUaccuGGCCCUGu -3'
miRNA:   3'- -CGG-----UGGGCG-------AGGuCCGAgu--CCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 85060 0.67 0.488683
Target:  5'- aCCACggCGCUgCAGGCcugCGGGCgCCUGu -3'
miRNA:   3'- cGGUGg-GCGAgGUCCGa--GUCCG-GGAC- -5'
29474 3' -63.3 NC_006151.1 + 84959 0.66 0.516618
Target:  5'- -aCGCCaCGCUCCAGGC-CAcGCUCg- -3'
miRNA:   3'- cgGUGG-GCGAGGUCCGaGUcCGGGac -5'
29474 3' -63.3 NC_006151.1 + 84531 0.74 0.173229
Target:  5'- cGCC-CCCGUUCCccguGGGCUUcuGGGCCCg- -3'
miRNA:   3'- -CGGuGGGCGAGG----UCCGAG--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 83110 0.68 0.442914
Target:  5'- gGgCGCCCGCgCCGGucgcagaGCUCGGGCgCCUu -3'
miRNA:   3'- -CgGUGGGCGaGGUC-------CGAGUCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 82699 0.67 0.507232
Target:  5'- gGCC-CCCGCgagggCCAGG---AGGCCCg- -3'
miRNA:   3'- -CGGuGGGCGa----GGUCCgagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 82134 0.66 0.526074
Target:  5'- aGCgGCCCGCgggcgggCCcggcGGCUCcAGGUCCg- -3'
miRNA:   3'- -CGgUGGGCGa------GGu---CCGAG-UCCGGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.