miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 138312 0.66 0.545174
Target:  5'- uCCGCgCGCUUCAGcuGCcugCGGGCCCg- -3'
miRNA:   3'- cGGUGgGCGAGGUC--CGa--GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 136980 0.66 0.545174
Target:  5'- gGCCG-CCGCgCCGGGCggCGGGCgCg- -3'
miRNA:   3'- -CGGUgGGCGaGGUCCGa-GUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 136269 0.69 0.393127
Target:  5'- uCCACCCGCggCC-GGCcuacgaccugCGGGCCCUc -3'
miRNA:   3'- cGGUGGGCGa-GGuCCGa---------GUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 135991 0.68 0.435089
Target:  5'- gGCCACCUucgccCUCCAcgacGGcCUCAucgcGGCCCUGa -3'
miRNA:   3'- -CGGUGGGc----GAGGU----CC-GAGU----CCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 134936 0.66 0.574219
Target:  5'- cCCGCCCGCccucUCC-GGCUacaucuugCAGGCCUc- -3'
miRNA:   3'- cGGUGGGCG----AGGuCCGA--------GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 132830 0.69 0.396386
Target:  5'- gGCCGCCCGCgggacggccaccaCGGGCggCcGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGag-----------GUCCGa-GuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 131604 0.69 0.401308
Target:  5'- uGCCcCCC-CUCCGGGC-C-GGCCCg- -3'
miRNA:   3'- -CGGuGGGcGAGGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 128426 0.66 0.526074
Target:  5'- cGCaCACgCCGCUCUuccaGGGCgUCucGGCCCa- -3'
miRNA:   3'- -CG-GUG-GGCGAGG----UCCG-AGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 127870 0.7 0.331699
Target:  5'- cGCCGCCCGCcgccguccaccUCCAGcucgucguccgaGCUCggGGGCCCc- -3'
miRNA:   3'- -CGGUGGGCG-----------AGGUC------------CGAG--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 125226 0.7 0.310555
Target:  5'- gGCCGCCCGUcgggcCCGGcGCUCccccGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGa----GGUC-CGAGu---CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 124921 0.67 0.488683
Target:  5'- uCCuuCCGCUUCAcGUcgCGGGCCCUGg -3'
miRNA:   3'- cGGugGGCGAGGUcCGa-GUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 124125 0.66 0.574219
Target:  5'- cGCCGuCCgGCUCCAcgguggugcGGCUggagcccgagCAGGCCUg- -3'
miRNA:   3'- -CGGU-GGgCGAGGU---------CCGA----------GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 122599 0.67 0.470457
Target:  5'- gGCguCCaCGaaCCAGGCggugCGGGCCCUc -3'
miRNA:   3'- -CGguGG-GCgaGGUCCGa---GUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 120870 0.71 0.277625
Target:  5'- aGCCACCUGCUCCGcuccgucauGGcCUCGcGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAGGU---------CC-GAGUcCGGGac -5'
29474 3' -63.3 NC_006151.1 + 120341 0.77 0.119473
Target:  5'- cGCgCGCCCGCguggCCGGGCUCgcGGGCgCCUa -3'
miRNA:   3'- -CG-GUGGGCGa---GGUCCGAG--UCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 118722 0.72 0.241858
Target:  5'- uGCCGCCUGCUgCAcGGCUacgugcuGGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAgGU-CCGAg------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 118372 0.76 0.138811
Target:  5'- cGCgCGCCCGCUUCGGGUUCucGGCCUa- -3'
miRNA:   3'- -CG-GUGGGCGAGGUCCGAGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 117649 0.72 0.247541
Target:  5'- cGCCGCgCUGCUCCgGGGCgucCAGGCaCCg- -3'
miRNA:   3'- -CGGUG-GGCGAGG-UCCGa--GUCCG-GGac -5'
29474 3' -63.3 NC_006151.1 + 117009 0.68 0.452585
Target:  5'- aCCACgCGCUCCcccgcGGGCcCGGGCCg-- -3'
miRNA:   3'- cGGUGgGCGAGG-----UCCGaGUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 114135 0.66 0.526074
Target:  5'- cGCCG-CCGCcgagCCGcGGCUCGGGCgCa- -3'
miRNA:   3'- -CGGUgGGCGa---GGU-CCGAGUCCGgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.