miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 37464 0.71 0.271383
Target:  5'- cGCgGCCCGCUaCCGcgccgcGGC-CGGGCCCg- -3'
miRNA:   3'- -CGgUGGGCGA-GGU------CCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 49015 0.71 0.271383
Target:  5'- gGCCaggACCCGUaccacgggCCGGGC-CAGGCCCa- -3'
miRNA:   3'- -CGG---UGGGCGa-------GGUCCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 120870 0.71 0.277625
Target:  5'- aGCCACCUGCUCCGcuccgucauGGcCUCGcGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAGGU---------CC-GAGUcCGGGac -5'
29474 3' -63.3 NC_006151.1 + 40153 0.71 0.283981
Target:  5'- gGCCGgcCCCGCggCCc-GCUCGGGCCCa- -3'
miRNA:   3'- -CGGU--GGGCGa-GGucCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 37725 0.71 0.283981
Target:  5'- cGCCAUggCCGC-CCAGgacccGCUCuGGGCCCUGc -3'
miRNA:   3'- -CGGUG--GGCGaGGUC-----CGAG-UCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 38300 0.71 0.290452
Target:  5'- gGCCGCCgCGCggcCCGGGCccgCGGaGCCCg- -3'
miRNA:   3'- -CGGUGG-GCGa--GGUCCGa--GUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 59331 0.71 0.290452
Target:  5'- cCCGCCCGCccCCAGcgcGCUCAGGgCCg- -3'
miRNA:   3'- cGGUGGGCGa-GGUC---CGAGUCCgGGac -5'
29474 3' -63.3 NC_006151.1 + 19488 0.7 0.309868
Target:  5'- cGCCGaugcCCCGCUCCGGGgcCUCGgggacgcaggcgcGGCCCa- -3'
miRNA:   3'- -CGGU----GGGCGAGGUCC--GAGU-------------CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 10905 0.7 0.310555
Target:  5'- uGCCGgCgCGgaCCGGGgUCGGGCCCa- -3'
miRNA:   3'- -CGGUgG-GCgaGGUCCgAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 14893 0.7 0.310555
Target:  5'- cGCCcgucgACCCGC-CCGGGCcCcGGCCCa- -3'
miRNA:   3'- -CGG-----UGGGCGaGGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 125226 0.7 0.310555
Target:  5'- gGCCGCCCGUcgggcCCGGcGCUCccccGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGa----GGUC-CGAGu---CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 39796 0.7 0.317487
Target:  5'- gGCCAaCCGCUggGGGCUCGGcGCCCc- -3'
miRNA:   3'- -CGGUgGGCGAggUCCGAGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 4187 0.7 0.324535
Target:  5'- cGUCACCUcCUCgAGGCaggCGGGCCCg- -3'
miRNA:   3'- -CGGUGGGcGAGgUCCGa--GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 59050 0.7 0.324535
Target:  5'- --aGCCgGCUCCAGGCgggCAGGCgCa- -3'
miRNA:   3'- cggUGGgCGAGGUCCGa--GUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 68216 0.7 0.324535
Target:  5'- aGCgGCCCuGCgCCAGGCgCAGcGCCCg- -3'
miRNA:   3'- -CGgUGGG-CGaGGUCCGaGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 38686 0.7 0.331699
Target:  5'- gGCCccggcgcaaGCgCCGCUCCcucGGaCUCGGGCCCg- -3'
miRNA:   3'- -CGG---------UG-GGCGAGGu--CC-GAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 56526 0.7 0.331699
Target:  5'- cGCCcucUUCGCcgCCGGGUUCGGGCCCc- -3'
miRNA:   3'- -CGGu--GGGCGa-GGUCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 127870 0.7 0.331699
Target:  5'- cGCCGCCCGCcgccguccaccUCCAGcucgucguccgaGCUCggGGGCCCc- -3'
miRNA:   3'- -CGGUGGGCG-----------AGGUC------------CGAG--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 64949 0.7 0.338978
Target:  5'- cGCCugGCCgCGCUgCGGGCgCAGGCCgaGc -3'
miRNA:   3'- -CGG--UGG-GCGAgGUCCGaGUCCGGgaC- -5'
29474 3' -63.3 NC_006151.1 + 57757 0.69 0.361506
Target:  5'- aGCCGCUCGUggcCCGGGCaCAGGgCCa- -3'
miRNA:   3'- -CGGUGGGCGa--GGUCCGaGUCCgGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.