Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29474 | 5' | -55 | NC_006151.1 | + | 74543 | 0.7 | 0.728233 |
Target: 5'- -gCGUGGUUgAGCUccuccUGGGGCUGGuUGCCc -3' miRNA: 3'- caGUACCGG-UCGA-----ACCUCGACU-ACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 74888 | 0.65 | 0.918973 |
Target: 5'- -cCGUGGCCGG---GGccAGCcGAUGCCg -3' miRNA: 3'- caGUACCGGUCgaaCC--UCGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 84043 | 0.67 | 0.848718 |
Target: 5'- -gCGUGGUgCGGC-UGGGGgUGggGCCg -3' miRNA: 3'- caGUACCG-GUCGaACCUCgACuaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 84243 | 0.66 | 0.906841 |
Target: 5'- uUCGUGGcCCAGC--GGAGCaUGcgcGUGCUc -3' miRNA: 3'- cAGUACC-GGUCGaaCCUCG-AC---UACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 85909 | 0.66 | 0.906841 |
Target: 5'- -cCGUGGCCGuGCaguacgaggaGGGGCUGG-GCCu -3' miRNA: 3'- caGUACCGGU-CGaa--------CCUCGACUaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 90038 | 0.66 | 0.893718 |
Target: 5'- ----cGGCCAGCcccaGGGC-GAUGCCg -3' miRNA: 3'- caguaCCGGUCGaac-CUCGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 91176 | 0.66 | 0.886793 |
Target: 5'- cGUCggGcGCCcGCgaggGGAGCaUGAUGCa -3' miRNA: 3'- -CAGuaC-CGGuCGaa--CCUCG-ACUACGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 92214 | 0.66 | 0.913032 |
Target: 5'- ----cGGCCGcGC-UGGAGCacGAUGCUg -3' miRNA: 3'- caguaCCGGU-CGaACCUCGa-CUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 98454 | 0.67 | 0.856774 |
Target: 5'- ---cUGGCCGGCcUGGcGCUGuggcGCCu -3' miRNA: 3'- caguACCGGUCGaACCuCGACua--CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 101445 | 0.73 | 0.561727 |
Target: 5'- gGUCGUGGUCGGCgccgUGGGcCUGG-GCCu -3' miRNA: 3'- -CAGUACCGGUCGa---ACCUcGACUaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 101689 | 0.69 | 0.767879 |
Target: 5'- cUCGUGGaCgAGCcguacgUGGAGCgggcGGUGCCc -3' miRNA: 3'- cAGUACC-GgUCGa-----ACCUCGa---CUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 102382 | 0.67 | 0.848718 |
Target: 5'- -cCGUGGCCaAGC-UGGcGCUGGUcGCg -3' miRNA: 3'- caGUACCGG-UCGaACCuCGACUA-CGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 106308 | 0.66 | 0.913032 |
Target: 5'- -aCAUGGCCAagacGC-UGGAcGC-GGUGCUg -3' miRNA: 3'- caGUACCGGU----CGaACCU-CGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 108720 | 0.67 | 0.856774 |
Target: 5'- aGUgGUGGCCAGCgccGAGgaGAcggugGCCc -3' miRNA: 3'- -CAgUACCGGUCGaacCUCgaCUa----CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 113518 | 0.67 | 0.879631 |
Target: 5'- uUCGUGGCgGacgcgcGCUuccUGGcGCUGAUGCg -3' miRNA: 3'- cAGUACCGgU------CGA---ACCuCGACUACGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 115008 | 0.7 | 0.697546 |
Target: 5'- -gCAUGGCCAGCUUGugguagacgguGAGgUGcgGCa -3' miRNA: 3'- caGUACCGGUCGAAC-----------CUCgACuaCGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 120887 | 0.73 | 0.531009 |
Target: 5'- cGUCAUGGCCucgcgcccGCUggUGGuGCUGG-GCCu -3' miRNA: 3'- -CAGUACCGGu-------CGA--ACCuCGACUaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 121294 | 0.67 | 0.856774 |
Target: 5'- -gCGUGGCCgaccgcgacgGGCgcUGGAGCgugGAggcgGCCg -3' miRNA: 3'- caGUACCGG----------UCGa-ACCUCGa--CUa---CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 134614 | 0.8 | 0.220069 |
Target: 5'- aGUCG-GGCCAGCgcgUGGcccAGCUGGUGCUg -3' miRNA: 3'- -CAGUaCCGGUCGa--ACC---UCGACUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 136956 | 0.67 | 0.879631 |
Target: 5'- cGUCcUGcGCCGccuGC-UGGAGCUGGccGCCg -3' miRNA: 3'- -CAGuAC-CGGU---CGaACCUCGACUa-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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