miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 5' -55 NC_006151.1 + 640 0.66 0.893718
Target:  5'- -aCGUGacGCCGGCUUccGGGGC-GcgGCCg -3'
miRNA:   3'- caGUAC--CGGUCGAA--CCUCGaCuaCGG- -5'
29474 5' -55 NC_006151.1 + 3734 0.8 0.243182
Target:  5'- gGUCcgGGCCGGCggcgggGGAGCUGGcguaGCCg -3'
miRNA:   3'- -CAGuaCCGGUCGaa----CCUCGACUa---CGG- -5'
29474 5' -55 NC_006151.1 + 3781 0.69 0.758134
Target:  5'- ----aGGCCGGaCUUGGuGCUGGaGCUg -3'
miRNA:   3'- caguaCCGGUC-GAACCuCGACUaCGG- -5'
29474 5' -55 NC_006151.1 + 5016 0.65 0.918973
Target:  5'- -gCcgGGCgGGCUccGGGGCcGggGCCg -3'
miRNA:   3'- caGuaCCGgUCGAa-CCUCGaCuaCGG- -5'
29474 5' -55 NC_006151.1 + 20060 0.69 0.777497
Target:  5'- aUgGUGGCCAGCUucUGGcgaAGCUcg-GCCa -3'
miRNA:   3'- cAgUACCGGUCGA--ACC---UCGAcuaCGG- -5'
29474 5' -55 NC_006151.1 + 28535 0.66 0.893718
Target:  5'- cGUCcgGGaCCGGCcaaUGGGGgaGccGUGCCc -3'
miRNA:   3'- -CAGuaCC-GGUCGa--ACCUCgaC--UACGG- -5'
29474 5' -55 NC_006151.1 + 28586 0.68 0.831992
Target:  5'- ---uUGGCCGGCgcguccccGGAgGCgGGUGCCg -3'
miRNA:   3'- caguACCGGUCGaa------CCU-CGaCUACGG- -5'
29474 5' -55 NC_006151.1 + 28864 0.68 0.831992
Target:  5'- -cCAuUGGCCGGCgcguccccGGAgGCgGGUGCCg -3'
miRNA:   3'- caGU-ACCGGUCGaa------CCU-CGaCUACGG- -5'
29474 5' -55 NC_006151.1 + 29601 0.68 0.840455
Target:  5'- ----cGGCCgcGGCggcgGGGGCUGGUGUg -3'
miRNA:   3'- caguaCCGG--UCGaa--CCUCGACUACGg -5'
29474 5' -55 NC_006151.1 + 48850 0.67 0.848718
Target:  5'- cUCGUGGCgCGcGCUgcUGGAGCccgaGAUcGCCa -3'
miRNA:   3'- cAGUACCG-GU-CGA--ACCUCGa---CUA-CGG- -5'
29474 5' -55 NC_006151.1 + 51829 1.12 0.001629
Target:  5'- gGUCAUGGCCAGCUUGGAGCUGAUGCCg -3'
miRNA:   3'- -CAGUACCGGUCGAACCUCGACUACGG- -5'
29474 5' -55 NC_006151.1 + 54836 0.65 0.918973
Target:  5'- cUCAcgGGCgAGCgcggGGAGUgccUGGUGCUc -3'
miRNA:   3'- cAGUa-CCGgUCGaa--CCUCG---ACUACGG- -5'
29474 5' -55 NC_006151.1 + 55037 0.71 0.655864
Target:  5'- ----cGGCCGGCgccgUGGAGaaGAUGCUc -3'
miRNA:   3'- caguaCCGGUCGa---ACCUCgaCUACGG- -5'
29474 5' -55 NC_006151.1 + 58846 0.68 0.831992
Target:  5'- --gGUGcGCCAGCgcgUGGAGCUc--GCCc -3'
miRNA:   3'- cagUAC-CGGUCGa--ACCUCGAcuaCGG- -5'
29474 5' -55 NC_006151.1 + 62100 0.71 0.676782
Target:  5'- gGUCGgccugGGCgCGGCcgUGGucgGGCUGAUGCUc -3'
miRNA:   3'- -CAGUa----CCG-GUCGa-ACC---UCGACUACGG- -5'
29474 5' -55 NC_006151.1 + 64754 0.69 0.758134
Target:  5'- -gCAgcggGGCCAccguGCgcgGGGGCUGGuUGCCg -3'
miRNA:   3'- caGUa---CCGGU----CGaa-CCUCGACU-ACGG- -5'
29474 5' -55 NC_006151.1 + 70807 0.67 0.879631
Target:  5'- cGUCGUGGgCAGCUaccGGcgcAGCUGGaucgUGCUc -3'
miRNA:   3'- -CAGUACCgGUCGAa--CC---UCGACU----ACGG- -5'
29474 5' -55 NC_006151.1 + 71193 0.72 0.613857
Target:  5'- cGUCAUGGCCucGCa-GGAGCUcGUGUCc -3'
miRNA:   3'- -CAGUACCGGu-CGaaCCUCGAcUACGG- -5'
29474 5' -55 NC_006151.1 + 71364 0.68 0.822462
Target:  5'- cGUCAUGGCCGugcaccugagcacGCUgcccgacGGGCUGuuUGCCu -3'
miRNA:   3'- -CAGUACCGGU-------------CGAac-----CUCGACu-ACGG- -5'
29474 5' -55 NC_006151.1 + 74316 0.66 0.915438
Target:  5'- cGUCGUGGUgCGGgUgcaGGGGCUGGUucucguuccgcacggGCCg -3'
miRNA:   3'- -CAGUACCG-GUCgAa--CCUCGACUA---------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.