miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 5695 0.73 0.327508
Target:  5'- -uGCCGGC-GCuGCgGCCACCGCUGCUg -3'
miRNA:   3'- ggUGGUCGuCGuCG-UGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 5878 0.69 0.526025
Target:  5'- gCCGCCGGgGGCcccGGCcuCUGCCGCUGCg -3'
miRNA:   3'- -GGUGGUCgUCG---UCGu-GGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 6219 0.67 0.644943
Target:  5'- cUCGCCggaggAGCcGCGGCGCCgggagcccuggcuGCCGCCGUc -3'
miRNA:   3'- -GGUGG-----UCGuCGUCGUGG-------------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 6289 0.67 0.696173
Target:  5'- uCgGCC-GCGGCGGCgGCCGCCAggaGCUg -3'
miRNA:   3'- -GgUGGuCGUCGUCG-UGGUGGUgg-CGA- -5'
29476 3' -59.5 NC_006151.1 + 9208 0.69 0.535785
Target:  5'- gCCACCcGCGGCAGCAUCccccccuCC-CCGUc -3'
miRNA:   3'- -GGUGGuCGUCGUCGUGGu------GGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 10014 0.68 0.615627
Target:  5'- gCGgCGGCGGCGGuCGCCGCgGCCa-- -3'
miRNA:   3'- gGUgGUCGUCGUC-GUGGUGgUGGcga -5'
29476 3' -59.5 NC_006151.1 + 10204 0.69 0.575393
Target:  5'- gCGCgGGCGGCGGCugCagagGCgGCUGCg -3'
miRNA:   3'- gGUGgUCGUCGUCGugG----UGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 10491 0.73 0.334903
Target:  5'- gCCGcCCGGC-GCGcGC-CCGCCGCCGCa -3'
miRNA:   3'- -GGU-GGUCGuCGU-CGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 10656 0.69 0.562433
Target:  5'- cCCGCCcaGGCGGCGggggagcgcggagcGCGCCGCCcccCCGUg -3'
miRNA:   3'- -GGUGG--UCGUCGU--------------CGUGGUGGu--GGCGa -5'
29476 3' -59.5 NC_006151.1 + 11351 0.69 0.526025
Target:  5'- gCCGCCcGCG--GGCGCUACCGCgCGCUc -3'
miRNA:   3'- -GGUGGuCGUcgUCGUGGUGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 11636 0.68 0.615627
Target:  5'- cCCACCcGCA-CAGCGCgcaCGCCgACCGCc -3'
miRNA:   3'- -GGUGGuCGUcGUCGUG---GUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 11894 0.67 0.6852
Target:  5'- gCCGCaucgaGGCGcgucgggguuuucGCGcccucGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGUGg----UCGU-------------CGU-----CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 12419 0.66 0.745079
Target:  5'- -gGCUGGguGgGGUgaggcgagugACCGCCACCGCc -3'
miRNA:   3'- ggUGGUCguCgUCG----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 12665 0.71 0.432874
Target:  5'- cCCGCCGccGCGGCcGCA--GCCGCCGCg -3'
miRNA:   3'- -GGUGGU--CGUCGuCGUggUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 15123 0.66 0.754607
Target:  5'- aCCGCCucuuucGCGGCAUCGCCgucucgGCCGCc -3'
miRNA:   3'- -GGUGGucgu--CGUCGUGGUGG------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 15268 0.71 0.441768
Target:  5'- cUCGCCcgAGCAG-AGCGCC-CCGCUGCg -3'
miRNA:   3'- -GGUGG--UCGUCgUCGUGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 15405 0.7 0.506714
Target:  5'- aCGCCGGCu-CGGaCACCACCGUCGCg -3'
miRNA:   3'- gGUGGUCGucGUC-GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 15888 0.74 0.301894
Target:  5'- cCCGCCGGgGgacgcgcgccccgacGCGGC-CCGCCGCCGCc -3'
miRNA:   3'- -GGUGGUCgU---------------CGUCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 17411 0.67 0.645954
Target:  5'- gCGCgCGGCAGCAGgGCCAgCgaGCCGg- -3'
miRNA:   3'- gGUG-GUCGUCGUCgUGGUgG--UGGCga -5'
29476 3' -59.5 NC_006151.1 + 17485 0.72 0.3818
Target:  5'- cUCGUCGGCGGC-GCGCCGCUGCUGCa -3'
miRNA:   3'- -GGUGGUCGUCGuCGUGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.