miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 728 0.68 0.625734
Target:  5'- uCCGCgGGCGGgGGCuuCCGCU-CCGCg -3'
miRNA:   3'- -GGUGgUCGUCgUCGu-GGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 1012 0.68 0.615627
Target:  5'- gUugCAaCGGCAGUucccuguacugACCACCACCGUg -3'
miRNA:   3'- gGugGUcGUCGUCG-----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 1090 0.66 0.706094
Target:  5'- aCCACC----GCAGgACCACCAUCGUc -3'
miRNA:   3'- -GGUGGucguCGUCgUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 1681 0.77 0.180921
Target:  5'- gCCGCCGagcccuccGCcGCGGcCGCCGCCGCCGCUu -3'
miRNA:   3'- -GGUGGU--------CGuCGUC-GUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 1717 0.71 0.450764
Target:  5'- uCCACCAccGCcGCcaccucCGCCGCCGCCGCa -3'
miRNA:   3'- -GGUGGU--CGuCGuc----GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 1836 0.68 0.605533
Target:  5'- gCCGCCGGgCcgAGgGGaccgagGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGGUC-G--UCgUCg-----UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 2108 0.66 0.753658
Target:  5'- -aGCgGGCcGCGGgGCCggccgucGCCGCCGCg -3'
miRNA:   3'- ggUGgUCGuCGUCgUGG-------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 2227 0.66 0.706094
Target:  5'- gCCcCCGGCGGCGGCGCgGaCGCUGg- -3'
miRNA:   3'- -GGuGGUCGUCGUCGUGgUgGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 2777 0.66 0.715954
Target:  5'- gCCGCgCGGagcucGCGGCACCcggGCCAgCGCa -3'
miRNA:   3'- -GGUG-GUCgu---CGUCGUGG---UGGUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 2915 0.67 0.645954
Target:  5'- -aGCCGGC-GCcGCGCCGCgccgaGCCGCg -3'
miRNA:   3'- ggUGGUCGuCGuCGUGGUGg----UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3089 0.74 0.306054
Target:  5'- -aGgCGGCgAGCAGCGCCgagagGCCGCCGCg -3'
miRNA:   3'- ggUgGUCG-UCGUCGUGG-----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3180 0.69 0.526025
Target:  5'- ----gGGCAGCgggucguagAGCACCACCACgCGCa -3'
miRNA:   3'- gguggUCGUCG---------UCGUGGUGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 3233 0.67 0.680194
Target:  5'- gCCGCauccaGGCGGCgcggcggcggagcggGGCGCCGCgGCgCGCg -3'
miRNA:   3'- -GGUGg----UCGUCG---------------UCGUGGUGgUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 3364 0.69 0.531873
Target:  5'- gCCACCucgggcgggcaguaGGCGGCgAGgGCCGCCucggaggGCCGCg -3'
miRNA:   3'- -GGUGG--------------UCGUCG-UCgUGGUGG-------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3423 0.66 0.725744
Target:  5'- cUCGCCGGCcgggacGCGGCGgaaGCCGCCGUc -3'
miRNA:   3'- -GGUGGUCGu-----CGUCGUgg-UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3863 0.71 0.441768
Target:  5'- -gGCCGGaGGgGGCGcCCGCCGCCGCc -3'
miRNA:   3'- ggUGGUCgUCgUCGU-GGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3968 0.66 0.745079
Target:  5'- gCCGCgCGGCGGCcucGGCGa-GCCgGCCGCg -3'
miRNA:   3'- -GGUG-GUCGUCG---UCGUggUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 4305 0.69 0.565417
Target:  5'- uCCGCCAGCucGCGGgGCaCGCgGCCGg- -3'
miRNA:   3'- -GGUGGUCGu-CGUCgUG-GUGgUGGCga -5'
29476 3' -59.5 NC_006151.1 + 5368 0.69 0.542654
Target:  5'- gCGCCGGCggggcugucucugcGGgGGCGCC-CCGCCGUc -3'
miRNA:   3'- gGUGGUCG--------------UCgUCGUGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 5611 0.81 0.106003
Target:  5'- cCCuCCGGCGGagggGGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGuGGUCGUCg---UCGUGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.