miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 50539 1.09 0.001201
Target:  5'- aCCACCAGCAGCAGCACCACCACCGCUc -3'
miRNA:   3'- -GGUGGUCGUCGUCGUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 58159 0.87 0.044229
Target:  5'- gCCACCGGCGGUagAGCGCCACCagcGCCGCg -3'
miRNA:   3'- -GGUGGUCGUCG--UCGUGGUGG---UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 64609 0.85 0.054804
Target:  5'- aCGCCAGCGGCGccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGUGGUCGUCGU--CGUGGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 53964 0.85 0.060975
Target:  5'- aCGCCAGCGGCGGCGgCGCCuCCGCg -3'
miRNA:   3'- gGUGGUCGUCGUCGUgGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 73462 0.84 0.067816
Target:  5'- gCugCAGguGCAGC-CCGCCGCCGCUc -3'
miRNA:   3'- gGugGUCguCGUCGuGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 97145 0.83 0.07948
Target:  5'- -gGCCAGCGGCAGguCCACCgaGCCGCa -3'
miRNA:   3'- ggUGGUCGUCGUCguGGUGG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 87475 0.83 0.081602
Target:  5'- uCCAgCAGCGGCAGcCGCCGCgGCCGCc -3'
miRNA:   3'- -GGUgGUCGUCGUC-GUGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 5611 0.81 0.106003
Target:  5'- cCCuCCGGCGGagggGGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGuGGUCGUCg---UCGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 68519 0.81 0.108791
Target:  5'- gCCGCCG--GGCAGCACCACCAgCGCg -3'
miRNA:   3'- -GGUGGUcgUCGUCGUGGUGGUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 65777 0.81 0.108791
Target:  5'- gCCGCCGGCGGCggcgauGGCGCCGCCcggcgcggacguGCCGCg -3'
miRNA:   3'- -GGUGGUCGUCG------UCGUGGUGG------------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 104401 0.81 0.111646
Target:  5'- aUCGCCGGCGGCGugcuggcccGCGCCGCCGCCGg- -3'
miRNA:   3'- -GGUGGUCGUCGU---------CGUGGUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 139720 0.81 0.111646
Target:  5'- -gGCCAGCAGCAGCACCAgCgGCgGCg -3'
miRNA:   3'- ggUGGUCGUCGUCGUGGU-GgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 69427 0.8 0.133681
Target:  5'- gCGCCA--GGCGGCGCCGCCGCCGUUc -3'
miRNA:   3'- gGUGGUcgUCGUCGUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 57102 0.8 0.133681
Target:  5'- gCGCC-GCgAGCAGCGCgCGCCGCCGCg -3'
miRNA:   3'- gGUGGuCG-UCGUCGUG-GUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 72045 0.79 0.137139
Target:  5'- cCCGCCGcGCAGCGucucggcggcgcGCGCCACCACcCGCg -3'
miRNA:   3'- -GGUGGU-CGUCGU------------CGUGGUGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 107990 0.79 0.137139
Target:  5'- gCCcCCGGC-GCAGCccGCCACCGCCGCc -3'
miRNA:   3'- -GGuGGUCGuCGUCG--UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 37684 0.79 0.140678
Target:  5'- aUCACCGGCAGCGugACC-CCGCCGCUg -3'
miRNA:   3'- -GGUGGUCGUCGUcgUGGuGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 106055 0.79 0.144301
Target:  5'- gCCACCuucGCGcGCuucguGCGCCACCGCCGCg -3'
miRNA:   3'- -GGUGGu--CGU-CGu----CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 37454 0.79 0.148009
Target:  5'- uCCGCCAgGCcGCGGC-CCGCUACCGCg -3'
miRNA:   3'- -GGUGGU-CGuCGUCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36171 0.79 0.148009
Target:  5'- cCCAgCAGCAGCAGCAgCC-CCGCCGg- -3'
miRNA:   3'- -GGUgGUCGUCGUCGU-GGuGGUGGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.