miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 18153 0.68 0.769911
Target:  5'- uCGGCGGgGGCGGCGGCgGGCAuguCGGa -3'
miRNA:   3'- cGUCGUCgUCGUCGUCG-UCGUu--GUUg -5'
29476 5' -54.7 NC_006151.1 + 18574 0.69 0.739806
Target:  5'- gGCGGCGGgAGCacAGCAcGCAGagccaGACGGCc -3'
miRNA:   3'- -CGUCGUCgUCG--UCGU-CGUCg----UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 19898 0.7 0.698273
Target:  5'- aGCAGCGcCAGgAGCugcGCGGCGcGCAGCa -3'
miRNA:   3'- -CGUCGUcGUCgUCGu--CGUCGU-UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 20314 0.71 0.634346
Target:  5'- cGUGGCguuGGCGGCGGCgAGCAGgAcgcGCGACa -3'
miRNA:   3'- -CGUCG---UCGUCGUCG-UCGUCgU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 21335 0.67 0.834976
Target:  5'- cGCGGCGGgGGUccGCGGCuGgAACGGCu -3'
miRNA:   3'- -CGUCGUCgUCGu-CGUCGuCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 21608 0.67 0.843535
Target:  5'- cGUGGCGGCGGCGuaGGCccGCGGgAGCg -3'
miRNA:   3'- -CGUCGUCGUCGUcgUCGu-CGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 23034 0.67 0.843535
Target:  5'- gGCGGCgaagaAGCgGGCGGCcGCGGCGagcccACGACc -3'
miRNA:   3'- -CGUCG-----UCG-UCGUCGuCGUCGU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 25375 0.73 0.518195
Target:  5'- gGCGGCGGUgacGGCGGCGGUGGUucuCGACc -3'
miRNA:   3'- -CGUCGUCG---UCGUCGUCGUCGuu-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 29590 0.82 0.152331
Target:  5'- cGCGGCGGCuGCGGCcGCGGCGGCGGg -3'
miRNA:   3'- -CGUCGUCGuCGUCGuCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 30077 0.68 0.813626
Target:  5'- gGCGGCGGUAGaCGGauguaguguacgaGGCGGCGAguACg -3'
miRNA:   3'- -CGUCGUCGUC-GUCg------------UCGUCGUUguUG- -5'
29476 5' -54.7 NC_006151.1 + 30335 0.69 0.739806
Target:  5'- -aGGaGGCGGCGGCGGC-GCGAgGGCg -3'
miRNA:   3'- cgUCgUCGUCGUCGUCGuCGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 30754 0.68 0.779691
Target:  5'- cGCgGGCGG-GGCGGgGGCAGCAcuCAGCg -3'
miRNA:   3'- -CG-UCGUCgUCGUCgUCGUCGUu-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 30865 0.72 0.543012
Target:  5'- gGCGGCGGCGGCGGaggaggggggaagaGGCGGCgAGCGGa -3'
miRNA:   3'- -CGUCGUCGUCGUCg-------------UCGUCG-UUGUUg -5'
29476 5' -54.7 NC_006151.1 + 33262 0.68 0.789326
Target:  5'- gGguGgGGCGGUGGCGGCGGCcAUcGCc -3'
miRNA:   3'- -CguCgUCGUCGUCGUCGUCGuUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 36018 0.67 0.851884
Target:  5'- aCGGCGGCAGCcagGGCuccCGGCGccGCGGCu -3'
miRNA:   3'- cGUCGUCGUCG---UCGuc-GUCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 36172 0.8 0.22059
Target:  5'- cCAGCAGCAGCAGCAGCcccgccggggcucgGGCGagaucguggugcuagACGACg -3'
miRNA:   3'- cGUCGUCGUCGUCGUCG--------------UCGU---------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 36362 0.74 0.467086
Target:  5'- cCGGCAGCAcucGCAGCGGCAGaggccggggccccCGGCGGCc -3'
miRNA:   3'- cGUCGUCGU---CGUCGUCGUC-------------GUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 36560 0.8 0.208976
Target:  5'- cCAGCAGCGGUGGCcGCAGCGcCGGCa -3'
miRNA:   3'- cGUCGUCGUCGUCGuCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 36950 0.93 0.026783
Target:  5'- uCAGCAGCuccAGCAGCAGCGGCAGCGACu -3'
miRNA:   3'- cGUCGUCG---UCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 38379 0.67 0.843535
Target:  5'- cCAGCGcCGGCGcCGGCGGCGGCGGg -3'
miRNA:   3'- cGUCGUcGUCGUcGUCGUCGUUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.