miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 2283 0.74 0.458335
Target:  5'- cCGGCGG-GGCGcccGCGGCGGCGACGGCg -3'
miRNA:   3'- cGUCGUCgUCGU---CGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 2352 0.66 0.883025
Target:  5'- cCAGCAGCGccGCGGC-GCAGaaggcgcGCAACu -3'
miRNA:   3'- cGUCGUCGU--CGUCGuCGUCgu-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 2591 0.74 0.477898
Target:  5'- cGCuGGCGGUAgGCGcGCGGCGGCAGCGGg -3'
miRNA:   3'- -CG-UCGUCGU-CGU-CGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 2673 0.72 0.591556
Target:  5'- gGCGGCAGaGGC-GCAGCGGCu-CGGCc -3'
miRNA:   3'- -CGUCGUCgUCGuCGUCGUCGuuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 3071 0.68 0.769911
Target:  5'- uGCAGaGGCGGUGGgcgaaGGCGGCgAGCAGCg -3'
miRNA:   3'- -CGUCgUCGUCGUCg----UCGUCG-UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 3248 0.72 0.569265
Target:  5'- cGCGGCGGCggAGCGgggcgccGCGGCGcGCGGCGAUg -3'
miRNA:   3'- -CGUCGUCG--UCGU-------CGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 3972 0.68 0.80812
Target:  5'- cGCGGCGGCcuCGGCgAGCcGGCcGCGGCc -3'
miRNA:   3'- -CGUCGUCGucGUCG-UCG-UCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 4077 0.66 0.897155
Target:  5'- cGCAcCAGCGGCGccacGguGCGgGCGACGAg -3'
miRNA:   3'- -CGUcGUCGUCGU----CguCGU-CGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 4242 0.66 0.883025
Target:  5'- gGCAGCcGgAGCgGGCAG-GGCAGCAGg -3'
miRNA:   3'- -CGUCGuCgUCG-UCGUCgUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 4324 0.72 0.570322
Target:  5'- cGCGGCcgGGCuGC-GCGGCGGCGaagGCGGCg -3'
miRNA:   3'- -CGUCG--UCGuCGuCGUCGUCGU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 4474 0.68 0.779691
Target:  5'- gGguGCGaucGUAGCGGCGGCucauGGCcACGGCg -3'
miRNA:   3'- -CguCGU---CGUCGUCGUCG----UCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 4543 0.68 0.789326
Target:  5'- -gGGCGGCcauGGCGuccccgauguGCGGCAGCGGCGGg -3'
miRNA:   3'- cgUCGUCG---UCGU----------CGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 4793 0.68 0.798806
Target:  5'- gGCcGCGGC-GCGGUAGCGgGCcGCGGCc -3'
miRNA:   3'- -CGuCGUCGuCGUCGUCGU-CGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 5245 0.73 0.507986
Target:  5'- cGCGGCGGCGGCGGgGGCccgGGgGGCGGa -3'
miRNA:   3'- -CGUCGUCGUCGUCgUCG---UCgUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 6289 0.68 0.789326
Target:  5'- uCGGCcGCGGCGGCGGCcGcCAGgAGCu -3'
miRNA:   3'- cGUCGuCGUCGUCGUCGuC-GUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 10012 0.77 0.327028
Target:  5'- -gAGCGGCGGCGGCGGUcGCcGCGGCc -3'
miRNA:   3'- cgUCGUCGUCGUCGUCGuCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 10200 0.76 0.334861
Target:  5'- cGCGGCgcgGGCGGCGGCuGCAGaGGCGGCu -3'
miRNA:   3'- -CGUCG---UCGUCGUCGuCGUCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17403 0.72 0.591556
Target:  5'- gGCGcGUGGCGcGCGGCAGCAGgGcCAGCg -3'
miRNA:   3'- -CGU-CGUCGU-CGUCGUCGUCgUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17491 0.66 0.875591
Target:  5'- gGCGGCGcGCcGCuGCuGCAcCAGCGACg -3'
miRNA:   3'- -CGUCGU-CGuCGuCGuCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17913 0.72 0.580919
Target:  5'- cGCGGCGGCGcugaucGCgacgcccaucaGGCAGCGGCGGCGu- -3'
miRNA:   3'- -CGUCGUCGU------CG-----------UCGUCGUCGUUGUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.