miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 50575 1.12 0.001473
Target:  5'- cGCAGCAGCAGCAGCAGCAGCAACAACa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 139686 1.06 0.00363
Target:  5'- uGCGGCAGCGGCGGCGGCAGCAACAGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 109318 1.04 0.004716
Target:  5'- gGCGGCAGCAGCGGCGGCGGCAACAACc -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 109045 1.02 0.006492
Target:  5'- gGCGGCAGCAGCAGCAGCAGCuACAGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 128044 0.98 0.012648
Target:  5'- cGCGGCAGCGGCGGCAGCGGCGGCuGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 36950 0.93 0.026783
Target:  5'- uCAGCAGCuccAGCAGCAGCGGCAGCGACu -3'
miRNA:   3'- cGUCGUCG---UCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 139722 0.91 0.039997
Target:  5'- cCAGCAGCAGCAcCAGCGGCGGCGACa -3'
miRNA:   3'- cGUCGUCGUCGUcGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 54088 0.87 0.069313
Target:  5'- uGCGGCGGCGGCGGCGGCcaugucggcugcgacGGCGGCGGCu -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCG---------------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 118874 0.87 0.072498
Target:  5'- -gAGCAGCGGCGGC-GCGGCGGCGACg -3'
miRNA:   3'- cgUCGUCGUCGUCGuCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 139515 0.86 0.08338
Target:  5'- aCAGCGGCAaCAGCAGCGGCAGCGAg -3'
miRNA:   3'- cGUCGUCGUcGUCGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 40550 0.84 0.113036
Target:  5'- gGCGGCGGUGGUggaAGCGGCGGCGGCGGCc -3'
miRNA:   3'- -CGUCGUCGUCG---UCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 71774 0.84 0.116176
Target:  5'- uGCGGCAGCGGCGGCGGgGGCuGCcGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCgUCGuUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 69985 0.84 0.1227
Target:  5'- uGCAGCGGCGGCAGCGuCAGCAcgcucucgACGGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCGUcGUCGU--------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 133962 0.84 0.1227
Target:  5'- cGCAGCAGCGGCAGCGGCcccucGGUggaGACGAUg -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCG-----UCG---UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 66787 0.83 0.140525
Target:  5'- aCGGCGGCGGCGGCGGCGGggcccggggaCGACGACg -3'
miRNA:   3'- cGUCGUCGUCGUCGUCGUC----------GUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 29590 0.82 0.152331
Target:  5'- cGCGGCGGCuGCGGCcGCGGCGGCGGg -3'
miRNA:   3'- -CGUCGUCGuCGUCGuCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 90899 0.81 0.178671
Target:  5'- cGCAGCcGCuGCAGCAGCGuCAGCAGCc -3'
miRNA:   3'- -CGUCGuCGuCGUCGUCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81609 0.8 0.193304
Target:  5'- cCGGCGcGCAGCAGCAG-GGCGACGGCg -3'
miRNA:   3'- cGUCGU-CGUCGUCGUCgUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 127990 0.8 0.203106
Target:  5'- uGCGGCGGCuccGCgucgcggucgcggGGCGGCGGCGACGGCg -3'
miRNA:   3'- -CGUCGUCGu--CG-------------UCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 36560 0.8 0.208976
Target:  5'- cCAGCAGCGGUGGCcGCAGCGcCGGCa -3'
miRNA:   3'- cGUCGUCGUCGUCGuCGUCGUuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.