miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 35866 0.66 0.346882
Target:  5'- cCGCGCUCG-GCgCCCgGCCU-CGCUCa -3'
miRNA:   3'- -GUGCGGGCgCGgGGGgUGGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 114128 0.67 0.339735
Target:  5'- cCACGUgCGcCGCCgCCgAgCCGCgGCUCg -3'
miRNA:   3'- -GUGCGgGC-GCGGgGGgUgGGCG-CGAG- -5'
29479 3' -68 NC_006151.1 + 11566 0.67 0.339735
Target:  5'- gGC-CCCGacacCCCCCCGCCCGCcgggggagGCUUc -3'
miRNA:   3'- gUGcGGGCgc--GGGGGGUGGGCG--------CGAG- -5'
29479 3' -68 NC_006151.1 + 13125 0.67 0.339735
Target:  5'- gCGCGCucCCGCGaCUUCCCgGCCCGCGaugCg -3'
miRNA:   3'- -GUGCG--GGCGC-GGGGGG-UGGGCGCga-G- -5'
29479 3' -68 NC_006151.1 + 65929 0.67 0.339735
Target:  5'- gGCGCCC-CGCCgCCgGCCCaGUcCUCg -3'
miRNA:   3'- gUGCGGGcGCGGgGGgUGGG-CGcGAG- -5'
29479 3' -68 NC_006151.1 + 58134 0.67 0.339735
Target:  5'- -uCGCCCGCGCCguaCgCGgCCGCGUg- -3'
miRNA:   3'- guGCGGGCGCGGg--GgGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 26372 0.67 0.335499
Target:  5'- gGgGCgCGCGUCCCCCGgcgggcggcguccuuCCCGCcCUCc -3'
miRNA:   3'- gUgCGgGCGCGGGGGGU---------------GGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 122788 0.67 0.335499
Target:  5'- gGCGgCUGCGCggCCUCGCCCgacgagcgccucgagGCGCUCa -3'
miRNA:   3'- gUGCgGGCGCGg-GGGGUGGG---------------CGCGAG- -5'
29479 3' -68 NC_006151.1 + 37245 0.67 0.332696
Target:  5'- gGC-CCCGgaGCCCgCCCGgccCCCGCGCa- -3'
miRNA:   3'- gUGcGGGCg-CGGG-GGGU---GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 28562 0.67 0.332696
Target:  5'- -gUGCCCGCGUCCCgggaGCCCGCa--- -3'
miRNA:   3'- guGCGGGCGCGGGGgg--UGGGCGcgag -5'
29479 3' -68 NC_006151.1 + 113541 0.67 0.332696
Target:  5'- gGCGCUgaugCGCGCCgCggGCCCGCGCg- -3'
miRNA:   3'- gUGCGG----GCGCGGgGggUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 61107 0.67 0.332696
Target:  5'- cCAgGCCCGCGUCgUCCAUUCGU-CUCg -3'
miRNA:   3'- -GUgCGGGCGCGGgGGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 21262 0.67 0.331998
Target:  5'- aCACGCCCaccaggaGCGCgCCCaucgcgguGCCCGUGC-Cg -3'
miRNA:   3'- -GUGCGGG-------CGCGgGGGg-------UGGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 102213 0.67 0.330605
Target:  5'- gGCGCCCgcacccacggggagGCGCCgUgCGCcgucgCCGCGCUCu -3'
miRNA:   3'- gUGCGGG--------------CGCGGgGgGUG-----GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 40135 0.67 0.330605
Target:  5'- gGCGUCCGCggcggcgacggccgGCCCCgCGgCC-CGCUCg -3'
miRNA:   3'- gUGCGGGCG--------------CGGGGgGUgGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 50789 0.67 0.325764
Target:  5'- gACGCCCcaGCuGCCgagaCCCCGCCaGCGCa- -3'
miRNA:   3'- gUGCGGG--CG-CGG----GGGGUGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 81760 0.67 0.325764
Target:  5'- gCugGUCCGCGggCgCCACCgggaCGCGCUCg -3'
miRNA:   3'- -GugCGGGCGCggGgGGUGG----GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 58684 0.67 0.325764
Target:  5'- cCGCGCCgUGCGCgCCgCGCCacaGCGC-Cg -3'
miRNA:   3'- -GUGCGG-GCGCGgGGgGUGGg--CGCGaG- -5'
29479 3' -68 NC_006151.1 + 71442 0.67 0.325764
Target:  5'- gGCcaCCCGC-CCCCCCuccuCCCuCGCUCc -3'
miRNA:   3'- gUGc-GGGCGcGGGGGGu---GGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 35207 0.67 0.325764
Target:  5'- gACGCcuCCGCGCgCCCauugGCCCGgGCg- -3'
miRNA:   3'- gUGCG--GGCGCGgGGGg---UGGGCgCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.