miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 36246 0.66 0.357067
Target:  5'- --aGCCCGgGUCCCCgGCCgccgggucccccgguCGgGCUCu -3'
miRNA:   3'- gugCGGGCgCGGGGGgUGG---------------GCgCGAG- -5'
29479 3' -68 NC_006151.1 + 15167 0.66 0.354135
Target:  5'- gGCGacaCGCGCgCCCUGCgCCGCGCc- -3'
miRNA:   3'- gUGCgg-GCGCGgGGGGUG-GGCGCGag -5'
29479 3' -68 NC_006151.1 + 139028 0.66 0.354135
Target:  5'- uCACGCUgGCacaccGCCaUCCCACgcugaUCGCGCUCa -3'
miRNA:   3'- -GUGCGGgCG-----CGG-GGGGUG-----GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 10299 0.66 0.354135
Target:  5'- gCACGuCCCGCGUCCCCgGCgucaucaCGCGg-- -3'
miRNA:   3'- -GUGC-GGGCGCGGGGGgUGg------GCGCgag -5'
29479 3' -68 NC_006151.1 + 14782 0.66 0.354135
Target:  5'- cCAC-CCCGcCGaCCCCCCGCUCGacCGCcCg -3'
miRNA:   3'- -GUGcGGGC-GC-GGGGGGUGGGC--GCGaG- -5'
29479 3' -68 NC_006151.1 + 101983 0.66 0.354135
Target:  5'- gGCGgCCGuCGCgCaaguuCCGCCCGCGCa- -3'
miRNA:   3'- gUGCgGGC-GCGgGg----GGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 106359 0.66 0.354135
Target:  5'- aCACGCUggacgcgggcgCGCGCCCgCCgcggcGCCCGCuGCg- -3'
miRNA:   3'- -GUGCGG-----------GCGCGGGgGG-----UGGGCG-CGag -5'
29479 3' -68 NC_006151.1 + 40458 0.66 0.354135
Target:  5'- gGCGCCUGCcUCCCCgGCCCG-GUg- -3'
miRNA:   3'- gUGCGGGCGcGGGGGgUGGGCgCGag -5'
29479 3' -68 NC_006151.1 + 53518 0.66 0.354135
Target:  5'- -cCGCCgCGCGCCCCgugagCCGCUccagggCGCGCa- -3'
miRNA:   3'- guGCGG-GCGCGGGG-----GGUGG------GCGCGag -5'
29479 3' -68 NC_006151.1 + 66629 0.66 0.354135
Target:  5'- aGCGCCUG-GCCUUCCACCgcaaCGCGUa- -3'
miRNA:   3'- gUGCGGGCgCGGGGGGUGG----GCGCGag -5'
29479 3' -68 NC_006151.1 + 66883 0.66 0.354135
Target:  5'- gCGCGCCCG-GCCCCgCGCCgGaggaCGC-Cg -3'
miRNA:   3'- -GUGCGGGCgCGGGGgGUGGgC----GCGaG- -5'
29479 3' -68 NC_006151.1 + 70657 0.66 0.354135
Target:  5'- gGCGCCCguccucacgcGCGCCgCCgGCgaGCGCUUc -3'
miRNA:   3'- gUGCGGG----------CGCGGgGGgUGggCGCGAG- -5'
29479 3' -68 NC_006151.1 + 94727 0.66 0.354135
Target:  5'- cCGCGCCacgGCGUCCCggcgcgcgCACUCGCGCg- -3'
miRNA:   3'- -GUGCGGg--CGCGGGGg-------GUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 10492 0.66 0.354135
Target:  5'- -cCGCCCggcgcGCGCCCgCCGCCgcagGCGCg- -3'
miRNA:   3'- guGCGGG-----CGCGGGgGGUGGg---CGCGag -5'
29479 3' -68 NC_006151.1 + 101100 0.66 0.353405
Target:  5'- gGgGCCCgggucggGCGUCUCgUGCCUGCGCUCc -3'
miRNA:   3'- gUgCGGG-------CGCGGGGgGUGGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 100366 0.66 0.351948
Target:  5'- gACGCCguggGCGCCUUCCGCgCCGaggucaacacgcacCGCUCg -3'
miRNA:   3'- gUGCGGg---CGCGGGGGGUG-GGC--------------GCGAG- -5'
29479 3' -68 NC_006151.1 + 57861 0.66 0.346882
Target:  5'- gGCGCUgguCGCGCgCCCCGCCgGCa--- -3'
miRNA:   3'- gUGCGG---GCGCGgGGGGUGGgCGcgag -5'
29479 3' -68 NC_006151.1 + 42578 0.66 0.346882
Target:  5'- gGCGCCaCGCGCCgCCCGucCCCGagagGCc- -3'
miRNA:   3'- gUGCGG-GCGCGGgGGGU--GGGCg---CGag -5'
29479 3' -68 NC_006151.1 + 39543 0.66 0.346882
Target:  5'- -uCGCCCGCGUggaggccuCCUUCGCCCGC-CUg -3'
miRNA:   3'- guGCGGGCGCG--------GGGGGUGGGCGcGAg -5'
29479 3' -68 NC_006151.1 + 133181 0.66 0.346882
Target:  5'- --gGCCaCGCGUCCCaCGgCCGCGCa- -3'
miRNA:   3'- gugCGG-GCGCGGGGgGUgGGCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.