Results 41 - 60 of 341 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 3' | -68 | NC_006151.1 | + | 22305 | 0.66 | 0.384207 |
Target: 5'- cCACGUCCGCGCCgagcgucguCCgggcgaccagcgCCGCCaauaGCGCUg -3' miRNA: 3'- -GUGCGGGCGCGG---------GG------------GGUGGg---CGCGAg -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 123086 | 0.66 | 0.384207 |
Target: 5'- gGCGCCUGUacgcggaccGCCUCUCG-CgGCGCUCg -3' miRNA: 3'- gUGCGGGCG---------CGGGGGGUgGgCGCGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 41592 | 0.66 | 0.391985 |
Target: 5'- uGCGaUCCGCGgagcCCgCCCCGgCCGCGCc- -3' miRNA: 3'- gUGC-GGGCGC----GG-GGGGUgGGCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 107997 | 0.66 | 0.391985 |
Target: 5'- gCGCaGCCCGCcaccGCCgCCgCCACCacCGCGCcCa -3' miRNA: 3'- -GUG-CGGGCG----CGG-GG-GGUGG--GCGCGaG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 126388 | 0.66 | 0.391985 |
Target: 5'- gCGgGCCCGCGCUgCuggCCAgCCGCGUc- -3' miRNA: 3'- -GUgCGGGCGCGGgG---GGUgGGCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 33937 | 0.66 | 0.376532 |
Target: 5'- gAgGCCCGCGCgCCCCGg--GgGCUCg -3' miRNA: 3'- gUgCGGGCGCGgGGGGUgggCgCGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 15269 | 0.66 | 0.376532 |
Target: 5'- -uCGCCCGagcagaGCgCCCCGCUgcgcagCGCGCUg -3' miRNA: 3'- guGCGGGCg-----CGgGGGGUGG------GCGCGAg -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 80528 | 0.66 | 0.368961 |
Target: 5'- gGCGCuccCCGCaucCCCUCCACCCGaCuCUCg -3' miRNA: 3'- gUGCG---GGCGc--GGGGGGUGGGC-GcGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 109774 | 0.66 | 0.368961 |
Target: 5'- gGCGCCCGCaccaCCCCCGagcuCCCGCcggaGUUUg -3' miRNA: 3'- gUGCGGGCGcg--GGGGGU----GGGCG----CGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 114264 | 0.66 | 0.368961 |
Target: 5'- gCGCGCCCucgaggagGUGCUCgCgCACCCGgaGCUCu -3' miRNA: 3'- -GUGCGGG--------CGCGGGgG-GUGGGCg-CGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 115110 | 0.66 | 0.368961 |
Target: 5'- cCAgGCCgGCGCCgCCgGCgaCGCGCg- -3' miRNA: 3'- -GUgCGGgCGCGGgGGgUGg-GCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 51650 | 0.66 | 0.368961 |
Target: 5'- aUAUGCUCGCugauGCCguugUCCCGCUCGgGCUCc -3' miRNA: 3'- -GUGCGGGCG----CGG----GGGGUGGGCgCGAG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 59487 | 0.66 | 0.368961 |
Target: 5'- gGCGCCCucgaagagcccgGCGgCCUCCGCgaCGCGCg- -3' miRNA: 3'- gUGCGGG------------CGCgGGGGGUGg-GCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 86919 | 0.66 | 0.368961 |
Target: 5'- aGCGCCCgGCGCCCagccuggaguCCCAgCUCgGCGCcaUCg -3' miRNA: 3'- gUGCGGG-CGCGGG----------GGGU-GGG-CGCG--AG- -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 83774 | 0.66 | 0.376532 |
Target: 5'- gCACGUacaGCGCCCCgccgagcgccaUCACCCGgGCa- -3' miRNA: 3'- -GUGCGgg-CGCGGGG-----------GGUGGGCgCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 33708 | 0.66 | 0.376532 |
Target: 5'- gCACGCUcucucuCGCacaCCCCCCAcaucacacucucCCCGCGCa- -3' miRNA: 3'- -GUGCGG------GCGc--GGGGGGU------------GGGCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 67040 | 0.66 | 0.376532 |
Target: 5'- cCACGCCgagCGCGCCaccgCCUACCUGCugGCg- -3' miRNA: 3'- -GUGCGG---GCGCGGg---GGGUGGGCG--CGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 77519 | 0.66 | 0.376532 |
Target: 5'- --aGCUgGCGCgCCUCGgCCGCGCg- -3' miRNA: 3'- gugCGGgCGCGgGGGGUgGGCGCGag -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 82530 | 0.66 | 0.376532 |
Target: 5'- uGCGCgUgucguugaGCGCCCCCaGCCCGCcgaGCUg -3' miRNA: 3'- gUGCGgG--------CGCGGGGGgUGGGCG---CGAg -5' |
|||||||
29479 | 3' | -68 | NC_006151.1 | + | 113798 | 0.66 | 0.376532 |
Target: 5'- aCACGCgCUGCugcgGCgCCaCgGCCuCGCGCUCg -3' miRNA: 3'- -GUGCG-GGCG----CGgGG-GgUGG-GCGCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home