miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 3873 0.73 0.115743
Target:  5'- gGCGCCCGcCGCCgCCggCGCCgGCGCUg -3'
miRNA:   3'- gUGCGGGC-GCGGgGG--GUGGgCGCGAg -5'
29479 3' -68 NC_006151.1 + 139456 0.73 0.118302
Target:  5'- gGCGcCCCGcCGCCCgCCACCUGCacaccgcggccccGCUCg -3'
miRNA:   3'- gUGC-GGGC-GCGGGgGGUGGGCG-------------CGAG- -5'
29479 3' -68 NC_006151.1 + 109818 0.73 0.121502
Target:  5'- gGC-CCCGCGCUCCCCGCUgGCGgaCc -3'
miRNA:   3'- gUGcGGGCGCGGGGGGUGGgCGCgaG- -5'
29479 3' -68 NC_006151.1 + 9469 0.73 0.121502
Target:  5'- cCGCGUCCGCuucgGCCCCCCGCggCCGCGg-- -3'
miRNA:   3'- -GUGCGGGCG----CGGGGGGUG--GGCGCgag -5'
29479 3' -68 NC_006151.1 + 109124 0.73 0.121502
Target:  5'- --gGCCCGCGCCCgCCGgCCGgGCa- -3'
miRNA:   3'- gugCGGGCGCGGGgGGUgGGCgCGag -5'
29479 3' -68 NC_006151.1 + 109592 0.73 0.12448
Target:  5'- -cCGCCCGCGCUCUUCACCC-CGC-Cg -3'
miRNA:   3'- guGCGGGCGCGGGGGGUGGGcGCGaG- -5'
29479 3' -68 NC_006151.1 + 50007 0.73 0.12448
Target:  5'- uGCGCgCCGCGCgCgCgGCCCGCGCg- -3'
miRNA:   3'- gUGCG-GGCGCGgGgGgUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 40219 0.73 0.12448
Target:  5'- gACGCCgGCaaCCCCUACCUGCuGCUCc -3'
miRNA:   3'- gUGCGGgCGcgGGGGGUGGGCG-CGAG- -5'
29479 3' -68 NC_006151.1 + 10119 0.73 0.12448
Target:  5'- aGCGCUCGCGCCCCUCGCUCuCuCUCc -3'
miRNA:   3'- gUGCGGGCGCGGGGGGUGGGcGcGAG- -5'
29479 3' -68 NC_006151.1 + 30516 0.73 0.127526
Target:  5'- -uCGCCCGCaccccucCCCCUCACCCcCGCUCc -3'
miRNA:   3'- guGCGGGCGc------GGGGGGUGGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 83914 0.73 0.127526
Target:  5'- aACGCCUGCGCCgcgaCCCGUCCGCGUa- -3'
miRNA:   3'- gUGCGGGCGCGGg---GGGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 118335 0.73 0.130641
Target:  5'- aGCG-CCGCGCCCgCCCuCUCGCGCg- -3'
miRNA:   3'- gUGCgGGCGCGGG-GGGuGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 50894 0.73 0.133826
Target:  5'- -cCGgCCGCGCCCCCCGCcuccuguugcuaCCGCGaUCa -3'
miRNA:   3'- guGCgGGCGCGGGGGGUG------------GGCGCgAG- -5'
29479 3' -68 NC_006151.1 + 125209 0.73 0.13512
Target:  5'- gGC-CCCGCGgCCCCCgcggccgcccgucggGCCCGgCGCUCc -3'
miRNA:   3'- gUGcGGGCGCgGGGGG---------------UGGGC-GCGAG- -5'
29479 3' -68 NC_006151.1 + 61448 0.72 0.137082
Target:  5'- -cCGCCCGCGUCCgCCGCCaUGUGCg- -3'
miRNA:   3'- guGCGGGCGCGGGgGGUGG-GCGCGag -5'
29479 3' -68 NC_006151.1 + 108568 0.72 0.137082
Target:  5'- cCGCGUCCGCGUCCUCC-UCCGcCGcCUCg -3'
miRNA:   3'- -GUGCGGGCGCGGGGGGuGGGC-GC-GAG- -5'
29479 3' -68 NC_006151.1 + 30915 0.72 0.140411
Target:  5'- aGCGCCCGCgggcgGCCCgcgcggaUCGCCCGCGCg- -3'
miRNA:   3'- gUGCGGGCG-----CGGGg------GGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 32040 0.72 0.140411
Target:  5'- cCGCGUCCGCaGCCgCCucugcagccgCCGCCCGCGC-Cg -3'
miRNA:   3'- -GUGCGGGCG-CGG-GG----------GGUGGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 77189 0.72 0.140411
Target:  5'- cCACGUccgccgCCGCGUCCUCCAucCCCGCGC-Cg -3'
miRNA:   3'- -GUGCG------GGCGCGGGGGGU--GGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 37974 0.72 0.140411
Target:  5'- gACGCCUGCGUCCUggCCugCCGCGgcgucCUCg -3'
miRNA:   3'- gUGCGGGCGCGGGG--GGugGGCGC-----GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.