miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 123432 0.75 0.092851
Target:  5'- gCACGCCuuCGCccaGCCCCCCAacaCgGCGCUCu -3'
miRNA:   3'- -GUGCGG--GCG---CGGGGGGUg--GgCGCGAG- -5'
29479 3' -68 NC_006151.1 + 50127 0.75 0.097535
Target:  5'- gCGCGCCCGaCGCCcacgcgagCCCCGCgCGCGCcCg -3'
miRNA:   3'- -GUGCGGGC-GCGG--------GGGGUGgGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 112195 0.75 0.097535
Target:  5'- cCGCGCCCgcaGCGCCUCCCcgugggcgcAgUCGCGCUCg -3'
miRNA:   3'- -GUGCGGG---CGCGGGGGG---------UgGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 11288 0.75 0.097535
Target:  5'- -cCGUCCcCGUCCCCCGCCCGCuCUCc -3'
miRNA:   3'- guGCGGGcGCGGGGGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 34121 0.75 0.097535
Target:  5'- uGCaCCCGC-CCCCCCACcgggcgggguCCGCGCUCc -3'
miRNA:   3'- gUGcGGGCGcGGGGGGUG----------GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 15911 0.75 0.098498
Target:  5'- aCGCgGCCCGcCGCCgCCCCGugaggcgggccucgcCCCGCGCUg -3'
miRNA:   3'- -GUG-CGGGC-GCGG-GGGGU---------------GGGCGCGAg -5'
29479 3' -68 NC_006151.1 + 31593 0.74 0.09996
Target:  5'- gCGCGCuCCGCGCUCCCCcgccGCCUGgGCg- -3'
miRNA:   3'- -GUGCG-GGCGCGGGGGG----UGGGCgCGag -5'
29479 3' -68 NC_006151.1 + 105299 0.74 0.100946
Target:  5'- cCGCGCCgGCgccuccgaggacgagGCCCCCCuggccgagGCCCGCGCg- -3'
miRNA:   3'- -GUGCGGgCG---------------CGGGGGG--------UGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 139131 0.74 0.101691
Target:  5'- gCGCGCCCcguGCGCCCUCgucuucccgcuguaCGCCCGCGCccUCg -3'
miRNA:   3'- -GUGCGGG---CGCGGGGG--------------GUGGGCGCG--AG- -5'
29479 3' -68 NC_006151.1 + 98686 0.74 0.102442
Target:  5'- cCGCGCCCcgcgucGUGCCCCCggagcagacggCGCgCGCGCUCg -3'
miRNA:   3'- -GUGCGGG------CGCGGGGG-----------GUGgGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 137645 0.74 0.104981
Target:  5'- -uCGUCCGCGCCCCCguCCCgGCGgaCg -3'
miRNA:   3'- guGCGGGCGCGGGGGguGGG-CGCgaG- -5'
29479 3' -68 NC_006151.1 + 78937 0.74 0.104981
Target:  5'- aCACGCacacaCGCGCgCgCCCGCCCGC-CUCg -3'
miRNA:   3'- -GUGCGg----GCGCGgG-GGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 66555 0.74 0.110239
Target:  5'- gCGCGgCCGCGCCgCCguggACCCGgCGCUCg -3'
miRNA:   3'- -GUGCgGGCGCGGgGGg---UGGGC-GCGAG- -5'
29479 3' -68 NC_006151.1 + 111129 0.74 0.110239
Target:  5'- gCGCGUCUguGCGCgCCCCCGCgCGCGCg- -3'
miRNA:   3'- -GUGCGGG--CGCG-GGGGGUGgGCGCGag -5'
29479 3' -68 NC_006151.1 + 87292 0.74 0.112959
Target:  5'- gCACGCgCCGCcCCCCUCGCCCgugGCGCa- -3'
miRNA:   3'- -GUGCG-GGCGcGGGGGGUGGG---CGCGag -5'
29479 3' -68 NC_006151.1 + 100735 0.74 0.112959
Target:  5'- -cCGCCCGCGCCCgCCUucacGCCCGaggaGCUg -3'
miRNA:   3'- guGCGGGCGCGGG-GGG----UGGGCg---CGAg -5'
29479 3' -68 NC_006151.1 + 68670 0.73 0.115461
Target:  5'- gGgGCCCGCGUcacccuuauaaccUCCCCGCCgGCGCUg -3'
miRNA:   3'- gUgCGGGCGCG-------------GGGGGUGGgCGCGAg -5'
29479 3' -68 NC_006151.1 + 103581 0.73 0.115743
Target:  5'- aCGCGCUCGCGgacaaCCCgCCCAUCaCGCGCUUc -3'
miRNA:   3'- -GUGCGGGCGC-----GGG-GGGUGG-GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 39977 0.73 0.115743
Target:  5'- -cCGCCgcggGCGCCCCgCCGgCCGUGCUCu -3'
miRNA:   3'- guGCGGg---CGCGGGG-GGUgGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 3873 0.73 0.115743
Target:  5'- gGCGCCCGcCGCCgCCggCGCCgGCGCUg -3'
miRNA:   3'- gUGCGGGC-GCGGgGG--GUGGgCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.